Re: [ccp4bb] CCP4BB Digest - 24 Jan 2017 to 25 Jan 2017 (#2017-26)

2017-01-26 Thread Claire Smith
Hello, I would like to ask a question related to a recent thread regarding bad/missing density. I have used SAD to solve the structure of a protein at about 2.6Å resolution. Phenix build a good portion of it (about 50%) and the density in this region is good. However, we cannot see ther rest 50%.

[ccp4bb] PDB validation of structure factors

2017-01-11 Thread Claire Smith
Hello, I am trying to run the PDB validation report for a structure that I have refined in Phenix (data was analyzed with Xtriage). However, the run reports a discrepancy on the completeness of data, as follows: % Data completeness 97.4 (29.08-2.10) Depositor (in resolution range)87.5 (29

[ccp4bb] Blend not outputting dendogram

2016-11-22 Thread Claire Smith
Hello, I am trying to use blend to merge several datasets. Blend seems to give "normal termination" with no errors but no tree file is being output and no clustering analysis is being done. Does anyone have an explanation for this? Logfile pasted below. Also a related question - how do I ensure t