Re: [ccp4bb] SAXS EM comparison

http://blake.bcm.tmc.edu/eman/eman1/ctfc/ctfc.html -Christoph -- | Christoph Besthttp://www.ebi.ac.uk/~best | European Bioinformatics Institute, Cambridge, UK +44-1223-492649

Re: [ccp4bb] conversion of cyroEM reconstruction from MRC to CCP4 format

4144 or ' print 'nsymbt=',unpack_from('i',header,23*4)[0],' should be 0' The issues we typically encountered were bad space groups (zero), wrong machine stamps (they should be 0x or 0x4144), missing the "magic bytes" that spell "MAP "

[ccp4bb] Scientific Programmer/Software Engineer with EMDB at EBI, Cambridge, UK

. Thank you! -Christoph -- | Dr Christoph Best http://www.ebi.ac.uk/~best | Project Leader Electron Microscopy Data Bank, PDB Europe | European Bioinformatics Institute, Cambridge, UK +44-1223-492649

Re: [ccp4bb] units of the B factor

mbol "B", > which will make it easy to say that the B factor was "80 B". This There is already the unit "barn" (b) for area - about the cross section of an uranium nucleus, it is 1E-8 A^2 (100 fm^2). http://en.wikipedia.org/wiki/Barn_%28unit%29 So a Born woul

Re: [ccp4bb] video that explains, very simply, what Structural Molecular Biology is about

ucated guess that often works. Oh, and the last paragraph of the paper is interesting... -Christoph -- | Dr Christoph Best http://www.ebi.ac.uk/~best | Project Leader Electron Microscopy Data Bank, PDB Europe | European Bioinformatics Institute, Cambridge, UK +44-1223-492649

Re: [ccp4bb] In PYMOL looks different from that in O

gt; any idea? I tried centering at many position, but the problem > remains. Looking forward to your suggestion. Did you switch on "orthoscopic view" in Pymol (in the "Display" menu of the Tk user interface)? Otherwise it uses a perspective projection so that object

Re: [ccp4bb] cryoEM maps out of scale for docking experiments

ty and has a lot of legacy problems to deal with, but it is good to see these maps being used and we are committed to supporting it. Best -Christoph -- | Dr Christoph Best http://www.ebi.ac.uk/~best | Project Leader Electron Microscopy Data Bank, PDB Europe | European Bioinformatics Institute, Cambridge, UK +44-1223-492649

Re: [ccp4bb] ccp4i, OS X 10.5.7, & security enforcement

hen you need to access it through $env). The only documentation I could find on that on the internet seems to be a Usenet posting from 1998 (quoted in http://wiki.tcl.tk/812) to which other people seem to usually react "this should be posted somewhere prominently"... -Christoph -

[ccp4bb] Scientific software engineer post with EMDB at EBI

want to know more. The post is an EMBL staff position with an initial contract for three years. Details are in the job posting at http://www.embl.de/aboutus/jobs/jobs_embl_ebi_hinxton/2009/09_049_ebi Please not that applications should be sent to Thanks! -Christoph -- | Dr Christoph Best

Re: [ccp4bb] IBM / MRI / tobacco mosaic virus

ml?ref=science -Christoph PS: The article was written by their Silicon Valley correspondent - bad luck for IBM Research that they are, after all, a computer company. -- | Christoph Besthttp://www.ebi.ac.uk/~best | European Bioinformatics Institute, Cambridge, UK +44-1223-492649

Re: [ccp4bb] CCP4 Wiki

full CCP4 wiki, but I think quite encouraging in the usefulness and robustness of the Wiki approack. -Christoph -- | Christoph Best <[EMAIL PROTECTED]> http://www.rzg.mpg.de/~cbest | Max-Planck-Institut fuer Biochemie, Munich, Germany +49-89-8578 2634

Re: [ccp4bb] Advice on img proc software

www.scipy.org http://matplotlib.sourceforge.net/ -Christoph -- | Christoph Best <[EMAIL PROTECTED]> http://www.rzg.mpg.de/~cbest | Max-Planck-Institut fuer Biochemie, Munich, Germany +49-89-8578 2634