>>>>> On Wed, 16 Sep 2009 16:57:18 -0700, Raja Dey <[email protected]> said:

    > Hi, I am getting a problem to prepare a figure in PYMOL. I have 4
    > nearly identical monomers in the AU sitting at the corners of a
    > rectangle. The 2 front monomers almost perfectly superimpose on
    > the back 2 when I am looking along the plane. I can see this view
    > in O program. For some reason I could not make this view in
    > PYMOL. It looks off in PYMOL. Front 2 looks widely separated and
    > back 2 looks colser at this orientation in PYMOL. Does anyone have
    > any idea? I tried centering at many position, but the problem
    > remains. Looking forward to your suggestion.

Did you switch on "orthoscopic view" in Pymol (in the "Display" menu of
the Tk user interface)? Otherwise it uses a perspective projection so
that objects farther away look smaller.

-Christoph

-- 
| Christoph Best         <[email protected]>           http://www.ebi.ac.uk/~best
| European Bioinformatics Institute, Cambridge, UK             +44-1223-492649

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