Hi,
I had a similar problem with a map crashing coot and pymol while it opened
fine in chimera. There was some kind of discrepancy in the file header and
the file size (slightly too small), but running through mapmask solved the
issue. I can't claim to have figured that out. James Holton showed me
es as for the
reference .mtz. The reference dataset was output from aimless (or whatever
package they used) with the default a
wrote:
> Well - that should not happen!
> Are the cell dimensions the same for the new data and the reference set?
> E
>
> On Fri, 17 Dec 2021 at 22:04,
Hi,
I recently came across this strange issue. I was using aimless in CCP4 to
scale my data and apply an Rfree from a reference .mtz
Neither the reference or the file I was working with had higher resolution
than 1.5
However aimless wrote out h, k, l and Rfree to 0.4. I did not click the
button t
Dear all,
The Kuriyan Lab at UC Berkeley is looking for a post-doc interested in
using Next Generation Sequencing and deep mutagenesis to investigate
function and allostery. The job posting can be found here.
https://www.nature.com/naturecareers/job/postdoctoral-associate-kuriyan-lab-howard-hughes
Hi Stephan,
It seems to be online at the following
http://cmm.osdd.net/gnsmmg/databases/cad/
Regards
Christine
On Tue, Apr 20, 2021 at 12:27 PM stephen.c...@rc-harwell.ac.uk <
stephen.c...@rc-harwell.ac.uk> wrote:
> Dear BB,
>
> Does anyone know if the cation-aromatic database (Reddy, 2007, P
Hi all,
We use Debian and SBGRID. We have coot and pymol running in stereo with 3D
vision glasses.
If that’s helpful.
Regards
Christine.
Sent from my iPad
> On Feb 20, 2021, at 7:57 AM, Paul Emsley wrote:
>
> FWIW, looks like somebody at ETH Zurich is (or had been) trying to bring
> Coo
Dear Michael
I would carefully check the backbone region around the tyrosine and make sure
it’s correct as errors there might be the issue.
Regards
Christine
Sent from my iPhone
> On Oct 19, 2020, at 11:52 AM, Boniecki, Michal
> wrote:
>
>
> Hello,
> I have a problem during refining with o
Hi Chris
We have it working with the Mate desktop. Composite disabled. Let me know if
you would like more details
Regards
Christine.
Sent from my iPad
> On Nov 8, 2019, at 4:18 AM, Chris Richardson
> wrote:
>
> Apologies for the only slightly relevant question.
>
> Does anyone know the corr
Hi all,
I just submitted a PDB deposition where two of the deposition authors did
not have an ORCID and it went through fine. As long as the corresponding
author (ie the person submitting the PDB) and the PI has the ID I think it
will work.
Regards
Christine
On Tue, Apr 9, 2019 at 8:34 AM Mark
Hi Adarsh,
As others have commented, you need your IR emitter to be connected to the
P4000 graphics card through the 3 pin connector to get stereo with the
vision 2 glasses unless you have a screen with a built in emitter. We
recently set up a system using a Quadro P4000 and the additional 3 pin
c
Dear Fridous
Have a look at https://www.ncbi.nlm.nih.gov/pubmed/14646118
Malonate as a cryoprotectant
Or https://www.ncbi.nlm.nih.gov/pubmed/20606259
Regards
Christine
On Fri, Oct 19, 2018 at 2:57 PM Firdous Tarique
wrote:
> Dear members
>
> I have got beautiful crystal hits in SaltRx screens
Hi,
I have looked in the archive for posts about this, but there hasn't been
one for about a year. Can anyone comment on whether they have managed to
get a linux flavor and GeForce cards to work with pymol and/or coot 3D
stereo? Geforce cards supposedly support openGL, but posts from October
last
Hi Rhys,
In Refmac, you can change the weighting of the Xray terms vs the geometry
restraints rather than use what is automatically assigned. Have you tried
this? In Phenix you can use secondary structure restraints (probably you
can do this in Refmac too, but I haven't tried) and try checking the
Hi Xiao,
I can confirm you need to buy an active adapter if you want to convert the
display port on the graphics card to DVI. The one that they supply with the
graphics card is passive and won't work. I was in the same boat about a year
ago. I bought a USB powered active adapter which allowed 1
Hi Todd,
I used to work on PNMT which also is supposedly monomeric and formed a
disulfide between monomers in the crystals. See
http://www.sciencedirect.com/science/article/pii/S1570963905000968?via=ihub
We showed that it was irrelevant to activity.
Cheers
Christine
Sent from my iPad
> On 20
Dear CCP4 readers
There is currently an opening on the MX beamlines at the Australian
Synchrotron. For the full job information consult the link below.
Regards
Christine
http://www.synchrotron.org.au/index.php/about-us/working-at-the-synchrotron/employment-opportunities/699-science-research-offi
Dear all,
A two year post-doctoral position associated with the macromolecular
crystallography group at the Australian Synchrotron is currently open for
applications.
To read the position description and application instructions please go to
http://www.synchrotron.org.au/index.php/about-us/working-
You might want to have a look at consurf, which maps conservation from an
alignment onto a structure.
http://consurf.tau.ac.il/
On 23/06/2011, at 6:42 PM, Simon Kolstoe wrote:
> Dear ccp4bb,
>
> One of my colleagues is interested in how a certain protein differs between
> species. He's done a b
Dear Brenda
Check out malonate
http://www.ncbi.nlm.nih.gov/pubmed/14646118?
ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubm
ed_DefaultReportPanel.Pubmed_RVDocSum
Malonate: a versatile cryoprotectant and stabilizing solution for
salt-grown macromolecular crystals.
H
Dear TriNigo
I would put waters in all the other difference density first (there
are several obvious waters even in the section of map you sent with
your email), without the substrate, and see if you see any more clues
as to what's going on. Do you expect something to be added on the
subs
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