[ccp4bb] Problems displaying CCP4i2 remotely on Mac with CCP4 8.0

2023-02-01 Thread Chris Richardson
other GL applications. As far as I can tell, this is because the GUI uses features of GL2.0+. Indirect GLX only supports GL up to 1.4. If anyone has this working, any help they can give would be greatly appreciated. Chris -- Chris Richardson | Scientific Computing - Division of Structural

Re: [ccp4bb] [Off-Topic] 3D Vision stereo with Ubuntu 18.04

2019-11-08 Thread Chris Richardson
te" "Disable". The step I was missing was the first one. In Ubuntu 16.04, stereo worked without having to do this. Thanks again, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk On 08/11/2019, 12:19, "CCP4 bulletin board on behalf of Chris Richard

[ccp4bb] [Off-Topic] 3D Vision stereo with Ubuntu 18.04

2019-11-08 Thread Chris Richardson
makes the display blank while X11 restarts itself every few seconds. Thanks in advance, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under

[ccp4bb] Stereo graphics systems

2019-09-13 Thread Chris Richardson
clarify, I'm seeking a desktop solution as we don't have the space for 3D projectors. If there is nothing else out there, I may have to start searching eBay for second hand IR emitters. Regards, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The In

[ccp4bb] PanDDA error revisiting old run

2018-06-20 Thread Chris Richardson
--->>> ## <~~~> ####### ### PanDDA exited with an error ### ## <~~~> ### -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk

Re: [ccp4bb] Coot 'Edit Chi Angles' on Mac misbehaving

2018-04-26 Thread Chris Richardson
g > On 26 Apr 2018, at 09:19, Chris Richardson wrote: > > I've just compiled Coot on the same Mac using Fink, and the dialogue for this > version of Coot shows CA <--> CB, CB <--> CG, and CG <--> CD angles for the > same residue. >From a quick look

[ccp4bb] Coot 'Edit Chi Angles' on Mac misbehaving

2018-04-26 Thread Chris Richardson
?We have an issue with the 'Edit Chi Angles' dialogue in Coot on Macs using the version of Coot bundled with CCP4. For some residues - such as Glu - the dialogue only shows the C <--> CA angle. If you tick the 'Add Chi Angles for Hydrogens' box, it adds CA <--> N. I've just compiled Coot on

[ccp4bb] Fluidigm TOPAZ system looking for new home

2013-09-11 Thread Chris Richardson
chive: http://web.archive.org/web/20060326075010/http://www.fluidigm.com/topazinstruments.htm If you're interested, please email nora.cro...@icr.ac.uk. Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital,

[ccp4bb] Cryo-Xe-Siter looking for new home

2013-06-11 Thread Chris Richardson
e email nora.cro...@icr.ac.uk. If we don't have any interest before this Friday it will be scrapped. Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in Eng

Re: [ccp4bb] GeForce Graphics cards

2013-02-14 Thread Chris Richardson
-- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk<http://icr.ac.uk/> The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, Lon

Re: [ccp4bb] Mac mini advice

2013-01-23 Thread Chris Richardson
up SMB make its use a nightmare with other modern operating systems. Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 wi

Re: [ccp4bb] Mac mini advice (rapidly veering off topic)

2013-01-23 Thread Chris Richardson
ot;corporate" IT. Support for NFS and other UNIXy under-the-hood features is changed or dropped seemingly on a whim with no real documentation. Their habit of making every change or new release a big surprise makes it difficult to plan for the future. I'm glad I've got that off my ches

[ccp4bb] CCP4 package and update managers: relocating installations

2013-01-16 Thread Chris Richardson
t looks like an input field. Regards, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Ol

Re: [ccp4bb] OT: Has anyone experienced problems with Apple laptop battery expansion?

2012-11-19 Thread Chris Richardson
dangerous It alarmed our health and safety people when I asked advice on the appropriate waste disposal route. YouTube has some interesting videos of laptop battery fires (for example: http://www.youtube.com/watch?v=pizFsY0yjss ). Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr

Re: [ccp4bb] [COOT] CCP4 6.3.0 released

2012-09-07 Thread Chris Richardson
conclusion about putting ccp4 6.3.0 in fink? I'd rather use the dmg installer (choosing alternative install locations seems a little wonky) but will bite the bullet if it's not going to be finkified. Thanks, once again, for all your hard work on fink over the years. Chris -- Dr

[ccp4bb] Staff scientist and post-doctoral positions at the Institute of Cancer Research, London, UK

2011-11-01 Thread Chris Richardson
(dale.wig...@icr.ac.uk<mailto:dale.wig...@icr.ac.uk>). -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk<http://icr.ac.uk> The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534

[ccp4bb] cTruncate fails after Scala - clipper::Message_fatal

2011-08-08 Thread Chris Richardson
mpiled by 32-bit fink on OS X 10.6.8. The GUI task runs to completion with other input MTZ files that I have tried. If I run the ctruncate command in a shell, it generates the same error. Dr Stephen Carr posted a similar query back in March 2011, but didn't get any replies on the

Re: [ccp4bb] Permissions and ownerships in ccp4 6.2.0

2011-07-19 Thread Chris Richardson
ioned issues with script permissions. Regards, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office

Re: [ccp4bb] rosetta/ubuntu

2011-07-08 Thread Chris Richardson
setta. Editing the files and adding 4.5 as an acceptable compiler should fix the problem. Note that the author of the blog post also has a fix for a piece of code that gcc v4.5 rejects on syntactical grounds. Regards, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Inst

Re: [ccp4bb] AMoRe fails to use model coordinates

2011-04-27 Thread Chris Richardson
z file. Most of the time. Thanks to Stefano Trapani and Jorge Navaza for pointing us in the direction of the standalone AMoRe. Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guar

[ccp4bb] AMoRe fails to use model coordinates

2011-04-27 Thread Chris Richardson
C > ## This script run with the command ## > # /sw/share/xtal/ccp4-6.1.13/bin/amore HKLIN > "/home/foop/temp/amoretest/AmoreModel_MR_trial.mtz" HKLPCK0 > "/tmp/foop/AmoreTest_1_3_hkl.tmp" TABLE1 > "/home/foop/temp/amoretest/AmoreModel_MR_trial.tab&qu

Re: [ccp4bb] Graphics card for Nvidia 3D vision

2011-03-01 Thread Chris Richardson
>>> Andreas Eichinger 03/01/11 9:24 AM >>> > We are currently setting up a new 3D workstation with a Samsung > SyncMaster 2233RZ monitor and a Nvidia 3D vision glasses kit on a > Redhat Enterprise Linux box. According to Nvidia, a Quadro FX 4800, > Quadro FX 4600 or Quadro FX 3700 graphics

Re: [ccp4bb] Full-screen stereo with Coot/PyMol/etc on 3D LCD displays?

2011-01-25 Thread Chris Richardson
On 25 Jan 2011, at 08:35, Harry M. Greenblatt wrote: > Has someone received an official answer from NVIDIA that they do *not* work? I raised this issue here back in November. Someone, whose email I cannot now find, replied off-list to say that they had been told by nVidia that 3D Vision did no

[ccp4bb] nVidia stereo problems : Mac Pro, Quadro FX 4800

2010-11-19 Thread Chris Richardson
s it should for stereo. nVidia's support for Mac is effectively non-existent, so I'm hoping that someone on ccp4bb has got this working in the past and knows the correct incantations. Regards, Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.uk The Institute

Re: [ccp4bb] Coot cannot read mtz or pdb files

2010-10-04 Thread Chris Richardson
On 4 Oct 2010, at 11:15, Leiman Petr wrote: > It cannot read in MTZ files (quote: "This is not an mtz file"). PDB files > are garbled up on reading as well. Most (but not all) connections are > broken. A screenshot is attached. Is the Mac set up with an unusual language, locale or set of formats?

[ccp4bb] Web sites & ports (was Regarding BMCD)

2009-06-13 Thread Chris Richardson
I go home or to a coffee shop with WiFi). Chris -- Dr Chris Richardson :: sysadmin :: Structural Biology :: icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office

Re: [ccp4bb] scala on mac osx - off topic, really

2008-05-07 Thread Chris Richardson
o so. I don't want to put them on ccp4, because they're so bodged that they'll probably cause more harm than good in the wild. Regards, Chris -- Dr Chris Richardson - sysadmin, Structural Biology Section, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospita

Re: [ccp4bb] arp/warp and refmac problem on os x

2008-04-24 Thread Chris Richardson
On 24 Apr 2008, at 3:38 PM, Ronnie Berntsson wrote: I've got a rather weird problem when trying to run arp/warp. When trying to run arp/warp (latest version 7.0.1) it complains that I should install a newer version of Refmac (5.4.0045). The version of Refmac I have installed is 5.4.0066, an

Re: [ccp4bb] Installing coot on MacOSX 10.5

2008-04-21 Thread Chris Richardson
The mind boggles as to why you'd need ruby to install Coot... Ruby is a dependency of SWIG (in Fink, at least). Chris -- Dr Chris Richardson - sysadmin, Structural Biology Section, icr.ac.uk The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee,

Re: [ccp4bb] Installing coot on MacOSX 10.5

2008-04-17 Thread Chris Richardson
On 17 Apr 2008, at 6:07 PM, Buz Barstow wrote: I'm having trouble installing coot on MacOSX 10.5.2 on my MacBook Pro (Core Duo model). I would like to install coot using fink, but am getting stuck when it comes to installing ruby. Has anyone else experienced this problem? I've spent the a

Re: [ccp4bb] Web site GOOD, Attachment BAD

2008-01-31 Thread Chris Richardson
with distressing regularity. Worse still, whole countries often have filtered access to such sites. Sometimes a (small) attachment will reach many more people than a link. Regards, Chris -- Dr Chris Richardson - sysadmin, Structural Biology Section, icr.ac.uk The Institute of Cancer Res