Re: [ccp4bb] Off topic: Cloning multi genes/multi cistronic in yeast

2014-08-13 Thread Chris Putnam
On 8/13/14 2:29 PM, Theresa Hsu wrote: Dear all One of my human membrane proteins have been described to interact with additional subunits for its activity. To obtain functional form in yeast (Saccharomyces), I can think of two approach of either cloning all the subunits under one promoter or

Re: [ccp4bb] differences between Rsym and Rmerge

2008-01-18 Thread Chris Putnam
On Friday 18 January 2008 11:18:45 am Mischa Machius wrote: > OK, that brings us back to a more substantial question: is any of   > these R values actually suitable to judge the quality of a given   > dataset? Instead of introducing novel R factors, one could also simply   > ignore them altogether,

Re: [ccp4bb] differences between Rsym and Rmerge

2008-01-18 Thread Chris Putnam
On Friday 18 January 2008 09:30:06 am Ethan A Merritt wrote: > > Rmerge is an average over replicate measurements of the intensity for > identical [hkl]. Rsym is an average over the measurements for all symmetry > equivalent reflections. > > In the presence of anomalous scattering, Rsym will be hig

Re: [ccp4bb] ADIT Validation server & Ramachandran outliers

2007-09-21 Thread Chris Putnam
On Friday 21 September 2007 09:03:56 am Sue Roberts wrote: > Yes, and I just got a pdb file back from the pdb that they flagged > with over forty bad residues. > > The Molprobity plot from the RCSB validation server shows zero > residues in disallowed regions. ( I got lucky, I didn't "fix" any bad

Re: [ccp4bb] remediated pdb and coordinate formates ...

2007-05-04 Thread Chris Putnam
On Friday 04 May 2007 01:10 am, Ingo P. Korndoerfer wrote: > but i think i would be willing to put up with having to add another 10 > lines to my scripts to process mmcif, if > that allows me to take home all the other advantages. > > the biggest problem at this point is, as far as i know (and thi