Re: [ccp4bb] how to create a figure of a blob

2024-07-19 Thread Jon Cooper
I am afraid I don't have knowledge of pymol options but can't one make a separate pdb file with a dummy atom at the desired position so that the map is centred there and then turn that molecule/atom off for the rendering step with the main molecule left on. Probably I completely misunderstood. C

Re: [ccp4bb] how to create a figure of a blob

2024-07-19 Thread Paul Emsley
On 19/07/2024 09:11, Harry Powell wrote: Hi I was wondering if moorhen might be useful for this? Yes.., yes it might. (moorhen.org) If one is going down that particular road then I'd recommend the following Preferences -> Map Contouring Settings -> Map Sampling Rate to maybe 2.5 or so - o

Re: [ccp4bb] how to create a figure of a blob

2024-07-19 Thread Harry Powell
Hi I was wondering if moorhen might be useful for this? Harry > On 18 Jul 2024, at 18:35, Paul Emsley wrote: > > On 7/18/24 15:33, Andrea Smith wrote: >> >> I have a “green blob” in my map and I want to create a picture of it. What >> is the best option to do this? >> >> [...] >> >> Is pri