[ccp4bb] Unable to send a query email to supp...@proteindiffraction.org

2023-11-13 Thread Shivani Sharma
I deposited some raw data on the protein diffraction server >2 months ago, but the status still shows unreleased, and DOI is TBA. I have tried multiple times now to send an email with my query to supp...@proteindiffraction.org, but it keeps failing (Microsoft undeliverable email address error).

[ccp4bb] Not able to see Glycine in stick form

2023-11-13 Thread Firdous Tarique
Hi everyone In ChimeraX I am not able to show Gly simultaneously as a stick and cartoon. If I am trying to show Gly as a stick then the cartoon line breaks up at this position. And this is for all structures if you see. By showing a cartoon and stick together, the sticks for all amino acids show u

[ccp4bb] How to describe/correct modulated diffraction?

2023-11-13 Thread Dr. Kevin M Jude
tl;dr: My data has native Patterson peaks but no tNCS; I can solve the structure and refine to reasonable R/Rfree, but much of the map is poor quality. More details: I have crystallized a heterodimer of Z domains (small three-helix bundles, like pdb id 8DA3) in a few different crystal forms that

Re: [ccp4bb] HH-Suite, HHBLits, HHSearch query

2023-11-13 Thread Nicholas Clark
Hello Harry, I have successfully used the HH-Suite in the recent past. I might be able to assist you. You can contact me off-list, since this isn’t directly related to CCP4. Best, Nick Clark On Mon, Nov 13, 2023 at 7:15 AM Harry Powell < 193323b1e616-dmarc-requ...@jiscmail.ac.uk> wrote: >

[ccp4bb] HH-Suite, HHBLits, HHSearch query

2023-11-13 Thread Harry Powell
Hi folks I was wondering if anyone on ccp4bb could give me a hand with some queries I have about HHBlits and HHSearch? The “issues” page on github (https://github.com/soedinglab/hh-suite/issues) seems to be completely moribund and no-one has answered any queries for quite some time - this may

Re: [ccp4bb] CCP4 Study Weekend 2024 - Early bird registration including standard student bursary deadline coming soon!

2023-11-13 Thread Karen McIntyre - STFC UKRI
Dear all, Registration is open for the 2024 CCP4 study weekend entitled "Decision making in MX - how to be a productive structural biologist". This year we are focusing on decision-making in macromolecular crystallography: when to use what automated tool, how to interpret the output and when yo