PDBj has a nice web-based mmCIF editor that
can help you edit mmCIF an validate the
data entered.
See https://pdbj.org/cif-editor/
Regards,
Mitch
Quoting Harry Powell <193323b1e616-dmarc-requ...@jiscmail.ac.uk>:
Hi
There is no particular special editor from PDB (or from anywhere
else
Dear all,
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Thank you all for your suggestions. Finally, I went with pentaethylene glycol
(PDB ID: 1PE) and the density looks pretty decent after a couple rounds of
refinement (the density "narrows down" and fits the PEG molecule almost
perfectly). Regarding the suggestions/assumptions that the density come
You sure that’s not a stray bit of polypeptide ?
On 31 Aug 2023, at 11:54, Eleanor Dodson
<176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote:
⚠ External sender. Take care when opening links or attachments. Do not provide
your login details.
I dont know what it is - but thats a beautiful map!
I dont know what it is - but thats a beautiful map! What was in the
crystallisation pot, do you know?
Eleanor
On Tue, 29 Aug 2023 at 18:22, Bijelic, Aleksandar <
abae22057430-dmarc-requ...@jiscmail.ac.uk> wrote:
> Dear CCP4 members,
>
> I found the attached density in some of my structures an
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https://pdbj.org/cif-editor/
HTH,
Luca
From: CCP4 bulletin board on behalf of Krishnan Raman
Reply to: Krishnan Raman
Date: Wednesday, 30 August 2023 at 15:06
To: "CCP4BB@JISCMAIL.AC.UK"
Subject: [ccp4bb] mmciif pdb file editor.
You don't often get email from rkrish...@biocryst.com. Learn
If you are already using dials anyway, adding
max_lattices=3
Say to the dials.index command line will probably do what you want
You can also look at them all in the reciprocal lattice viewer.
All the best Graeme
> On 31 Aug 2023, at 09:20, Harry Powell
> <193323b1e616-dmarc-requ...@jisc
Hi Matt
Call me old-fashioned but I’d use Mosflm for this. The multiple lattice
autoindexing is easy to run and easy to interpret.
Harry
> On 30 Aug 2023, at 16:20, Matt McLeod wrote:
>
> Hi all,
>
> I have a lot of large datasets that I want to screen to determine if there
> are one or two
Dear Krish,
As Harry mentioned, a simple text editor will work.
May I recommend using Visual Studio Code using the CIF extension by
Heikki Kainulainen? https://github.com/hmkainul/vscode-cif /
https://marketplace.visualstudio.com/items?itemName=thisperiodictable.cif
Cheers,
Deborah
On 31/
Hi
There is no particular special editor from PDB (or from anywhere else, as far
as I know) for doing this - mmCIF is basically a simple text file with a
defined set of contents. It frees you from the tyranny of fixed-width columns
that your have in the historic PDB file.
I’d just use whatever
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