Hi Laurent,
this prompte a couple of questions -
1. where did you collect the data?
2. can this not be answered by the beamline staff? After all they should know
their detector, and procedures for use of its data.
3. what are the exact error messages when using the neggia plugin? I guess
Dectri
Sometimes neggia has hiccups with uncompressed h5 images, in which case I
recommend using eiger2cbf via H5ToXDS (instructions here:
https://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Eiger#A_script_for_faster_XDS_processing_of_CBF-converted_Eiger_data)
I have found that in most cases, u
Dear Laurent,
you can enable xdsme to process Eiger data in hdf5 format by giving it the path
to neggia plugin. For example
xdsme -i "LIB= /path/to/dectris_neggia.so" collect_master.h5
This will work on both Linux and OSX/macOS provided the plugin has been
compiled for the given platform.
You
Hi,
Dectris has a plugin, neggia, which they say allows the use of HDF5 format
files directly in XDS without interconversion:
https://www.dectris.com/company/news/newsroom/news-details/process-eiger-data-with-xds-fast
Cheers,
Raghurama
-Original Message-
From: CCP4 bulletin board
Dear All,
my lab at the University of Oulu, Finland, has two open positions to be filled
in September. The positions are part of a multidisciplinary collaborative
project aiming at a comprehensive understanding of protein structure/function
and disease mechanisms in human hereditary neuropathie
Postdoctoral Research Assistant – Electron Microscopy
Sir William Dunn School of Pathology, South Parks Road, Oxford
Grade 7: £31,604 - £38,833 p.a.
A joint postdoctoral position is available for Dr Ivan Ahel’s and Dr Dragana
Ahel’s groups at the Sir William Dunn School of Pathology, Uni
Dear Laurent,
On Thu, May 31, 2018 at 02:58:52PM +0200, maveyrau wrote:
> we recently collected many datasets on dectris detectors producing
> hd5 files. I would like to use some auto processing tools to process
> them (xdsapp, xdsme…). As far as I can say, xdsapp or xdsme cannot
> process hd5 nat
Hi
The first thing I would try is to process the HDF5 files directly with DIALS,
which reads several different "dialects" of HDF5 (the wonderful thing about a
standard format is that everyone implements their own idea of a standard...).
If that doesn't work, I think you would need to provide mo
Hi CCP4ers
we recently collected many datasets on dectris detectors producing hd5 files. I
would like to use some auto processing tools to process them (xdsapp, xdsme…).
As far as I can say, xdsapp or xdsme cannot process hd5 natively. I tried to
convert them to cbf format (eiger2cbf, hdf2mini-
