Thanks!
On 03/25/2017 03:36 PM, Paul Emsley wrote:
On 24/03/2017 03:39, Alex Lee wrote:
Dear All,
Is there a tool or software which can give Ramachandran information of
individual residues
in a plot?
I used Coot to check for Ramachandran plots, but it shows all the residues in a
coordinate
On 24/03/2017 03:39, Alex Lee wrote:
Dear All,
Is there a tool or software which can give Ramachandran information of
individual residues
in a plot?
I used Coot to check for Ramachandran plots, but it shows all the residues in a
coordinate I
put in Coot, not individual one. I also use "residu
On 25/03/2017 07:15, Pavel Afonine wrote:
Except that Procheck is now ages behind the standard, with Molprobity being the
standard.
I'm not sure even if Coot uses the latest libraries.
For the record, it doesn't (yet). If you want to be completely accurate, I recommend
Molprobity.
Paul.
On 24/03/2017 20:35, Ursula Schulze-Gahmen wrote:
Although I have used Coot a lot for modeling protein structures, I have little
experience
using it for nucleic acids. I am trying to translate fragments of nucleic acid
using the
rotate/translate zone option in Coot. But I am unable to select a
Ls,
It is not possible to determine the secondary structure from the
position in the Ramachandran plot. For a residue to be helical, it must
have hydrogen bonds that correspond with a helix, and so need its
neighbours. If these conditions are met, a residue will by necessity
have backbone tor
Except that Procheck is now ages behind the standard, with Molprobity being
the standard. I'm not sure even if Coot uses the latest libraries. Those I
quoted in example below come from latest Molprobity (Phenix that is) and
are the latest.
Pavel
On Fri, Mar 24, 2017 at 2:55 PM, Edward A. Berry
