On 24/03/2017 03:39, Alex Lee wrote:
Dear All,
Is there a tool or software which can give Ramachandran information of
individual residues
in a plot?
I used Coot to check for Ramachandran plots, but it shows all the residues in a
coordinate I
put in Coot, not individual one. I also use "residue info" in coot, it tells
Ramachandran
"phi psi" angles of individual residue, but it does not show it in a plot, only
numbers.
Put this in your ~/.coot-preferences directory and when you want to Rama-check a residue,
bring it to the centre of the screen, click on Rama -> Rama Plot for this Residue.
Paul.
(if (defined? 'coot-main-menubar)
(let ((menu (coot-menubar-menu "Rama")))
(add-simple-coot-menu-menuitem
menu "Rama Plot for This Residue"
(lambda ()
(using-active-atom
(let* ((sel-str (string-append "//" aa-chain-id "/"
(number->string (- aa-res-no 1))
"-"
(number->string (+ aa-res-no 1))))
(imol (new-molecule-by-atom-selection aa-imol sel-str)))
(do-ramachandran-plot imol)
(set-mol-displayed imol 0)
(set-mol-active imol 0)))))))
