Re: [ccp4bb] How long does it take crank 2 (refmac step) to run?

2015-01-31 Thread Pavol Skubak
Hi Nick, that is certainly not normal, this first step may take minutes (or tens of seconds with small datasets) to run and the logfile is continuously updated. From your report it seems that from some reason it got stuck right at the beginning of your job. I have not seen this issue before. Ca

Re: [ccp4bb] How long does it take crank 2 (refmac step) to run?

2015-01-31 Thread Nick Huang
Hi Gabriel, My datasize is very small with a very low resolution. Was there an error output when your refmac process didn't converge? I started a SAD process along as you suggested and will see what is going to happen. Thanks NIck >> Hi Nick, In my experience, this is too long and there is pr

[ccp4bb] How long does it take crank 2 (refmac step) to run?

2015-01-31 Thread Nick Huang
Hi all, I started a crank 2 process to run a SAD model building with a partial model input yesterday. From the log file, crank 2 was in the step of "Starting process of iterative refinement and (substructure) atom picking" and had been running a whole night without any further output. Does anybody