[ccp4bb] Refinement problem

2014-09-09 Thread Appu kumar
Hello All, I am new to low resolution refinement parametrization and regularization. Crystal diffracted with high anisotropy reaching to 3.5A in one direction and 4.5A other direction. I am refining a structure at 3.9A resolution. Protein has two domain connected trhough a linker and is packed as

Re: [ccp4bb] Coot - way to move the center pointer to a specific x,y,z coordinate?

2014-09-09 Thread Alejandro Virrueta
Found a solution. Thanks everyone! On Tue, Sep 9, 2014 at 4:17 PM, Alejandro Virrueta < alejandro.virru...@yale.edu> wrote: > Does anyone knowhow to move the center pointer to a specific x,y,z > coordinate? Or to place some kind of marker at a specific x,y,z coordinate? > > Thanks, > Alex >

Re: [ccp4bb] Coot - way to move the center pointer to a specific x,y,z coordinate?

2014-09-09 Thread Nat Echols
In Python scripting (Calculate menu): set_rotation_centre(x, y, z) I assume there's a Scheme equivalent. -Nat On Tue, Sep 9, 2014 at 1:17 PM, Alejandro Virrueta < alejandro.virru...@yale.edu> wrote: > Does anyone knowhow to move the center pointer to a specific x,y,z > coordinate? Or to place

Re: [ccp4bb] Coot - way to move the center pointer to a specific x,y,z coordinate?

2014-09-09 Thread MARTYN SYMMONS
I usually add a fiducial waters to the pdb file (chain Z - remember those?) - or otherwise heavy atoms which will come up in a distinctive colour usually... Then 'go to atom' under draw menu? Martyn Cambridge Original message >From : alejandro.virru...@yale.edu Date : 09/09/2014 - 21:17 (

[ccp4bb] Coot - way to move the center pointer to a specific x,y,z coordinate?

2014-09-09 Thread Alejandro Virrueta
Does anyone knowhow to move the center pointer to a specific x,y,z coordinate? Or to place some kind of marker at a specific x,y,z coordinate? Thanks, Alex

[ccp4bb] BioSAXS staff scientist position at SSRL BL4-2

2014-09-09 Thread Weiss, Thomas M.
Dear Colleagues, we have an immediate opening for a staff scientist in biological small-angle scattering at the Stanford Synchrotron Radiation Lightsource BL4-2 and are seeking a highly motivated individuals with experience in biological small angle scattering methods and synchrotron instrumen

[ccp4bb] Postdoctoral Position at Johns Hopkins

2014-09-09 Thread Cynthia Wolberger
A postdoctoral position is available immediately in the laboratory of Dr. Cynthia Wolberger in the Department of Biophysics and Biophysical Chemistry at the Johns Hopkins University School of Medicine in Baltimore, Maryland. The project entails an interdisciplinary approach to studying regulation o

[ccp4bb] Academic Position at San Diego State University

2014-09-09 Thread Tom Huxford
Dear CCP4BB community: The Department of Chemistry & Biochemistry at San Diego State University has announced a search for a tenure-track faculty position in the broadly defined field of "Physical Biochemistry". The official advertisement can be read at: http://www.chemistry.sdsu.edu/news/sear

Re: [ccp4bb] Latest BALBES database

2014-09-09 Thread Andrey Lebedev
Dear Michael Indeed the Balbes database is three year old and there is no newer version elsewhere. However, there is a good chance that updates will be resumed this year. Regards Andrey On 9 Sep 2014, at 16:26, Michael Weyand wrote: > Dear all, > > may be my google-ing capabilites are to bad

[ccp4bb] Prof. Michael Levitt FRS Seminar 12 Nov. 2014 at King's College London

2014-09-09 Thread Lorenz, Chris
The Randall Division of Cell and Molecular Biophysics, The Departments of Chemistry and Physics of King's College London and The Thomas Young Centre (The London Centre for the Theory and Simulation of Materials) are delighted to announce the 9th Lecture of the Randall Lecture Series. The 9th Le

[ccp4bb] Latest BALBES database

2014-09-09 Thread Michael Weyand
Dear all, may be my google-ing capabilites are to bad, but I can not find an update of the Balbes model database. The latest tar-file from the homepage is dated 12/2011, which is more or less the same to the CCP4 download. Is there any expert who is able to guide me to a more actual version? Not t

Re: [ccp4bb] Bruker Webinar Series

2014-09-09 Thread Benning, Matthew
Dear Colleagues As part of Bruker's continuing webinar series on macromolecular crystallography techniques, Dr. Elspeth Garman from the Department of Biochemistry at Oxford University will present a 45 minute interactive webinar entitled "Radiation Damage in Macromolecular X-ray Crystallography:

[ccp4bb] Bruker Webinar Series

2014-09-09 Thread Benning, Matthew
Dear Colleagues As part of Bruker's continuing webinar series on macromolecular crystallography techniques, Dr. Elspeth Garman from the Department of Biochemistry at Oxford University will present a 45 minute interactive webinar entitled "Radiation Damage in Macromolecular X-ray Crystallography:

Re: [ccp4bb] CCPBioSim 1-day training course: How to set up a protein simulation, 29th Sept, Oxford

2014-09-09 Thread Martyn Winn
A reminder of this free 1-day training course. The deadline for expressing interest is 14th September (this Sunday). Cheers Martyn -Original Message- From: Winn, Martyn (STFC,DL,SC) Sent: 06 August 2014 22:25 To: 'ccp4bb@jiscmail.ac.uk' Subject: CCPBioSim 1-day training course: How to s