[ccp4bb] Post-doctoral position at Heinrich Heine University, Duesseldorf

2013-12-20 Thread Daniel Schlieper
Post-doctoral position in structure-function studies on plant-selective herbicides Weed control by selective herbicides is an important instrument to secure global food supply. Recent structural and biochemical studies in our lab have identified new selective inhibitors of a protein essential

Re: [ccp4bb] How to config CPU to run ccp4 with multi-processor

2013-12-20 Thread Tom Oldfield
Hi If any use: I have commonly used the C/C++ and Java threaded code to create parallel processes. Python threading is badly implemented and best avoided, use sub-processes instead as these are forked. 1) CPU intensive code with no dependency scales close to N where N < cores available, for al

Re: [ccp4bb] How to config CPU to run ccp4 with multi-processor

2013-12-20 Thread Adam Ralph
I agree with George and Marcin that getting significant speedups is a non-trivial business. Unfortunately as CPU clock speeds drop, to become more energy efficient, the only way to keep performance up is to work in parallel. Accelerator technology and Hadoop make many-core environments more acc

Re: [ccp4bb] rmsd

2013-12-20 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Faisal, it is not a server, but you can use lsqman (G. Kleywegt) for this with the following three lines typed at the prompt: re m1 file1.pdb re m2 file2.pdb rmsd_calc m1 A1-999 m2 A1 You could also align the molecules in coot, it will print th

[ccp4bb] rmsd

2013-12-20 Thread Faisal Tarique
Dear all Can anybody please tell me if there is any sever where i can find RMSD and no of C alpha of the two structures which were aligned manually in PYMOL.. really apologize for asking off topic question.. thanks in advance -- Regards Faisal School of Life Sciences JNU

[ccp4bb] Post-doctoral Position at Karolinska Institutet, Stockholm

2013-12-20 Thread Jodie Guy
A post-doctoral position is immediately available in the Division of Molecular Structural Biology at Karolinska Institutet in Stockholm (http://phillips.mbb.ki.se), to work on the structure and function of multi-protein complexes involved in protein processing in the eukaryotic ER and early se

[ccp4bb] CCP4MG Release 2.8.0

2013-12-20 Thread Stuart Mcnicholas
Dear All, The CCP4MG team would like to announce version 2.8.0 of the program (the Christmas 2013 release). The program may be downloaded from http://www.ccp4.ac.uk/MG/download/ Highlights of this release include: - Reworked picture wizards and default program parameters to give more comp

[ccp4bb] PhD position in structure-function studies of redox stress signaling proteins

2013-12-20 Thread Inge Van Molle
On behalf of Prof Joris Messens: PhD position in structure-function studies of redox stress signaling proteins Position: A PhD Research position is immediately available for structure-function studies on peroxiredoxins of pathogentic Actinomycetes that control signaling during oxidati