Re: [ccp4bb] Dependency of theta on n/d in Bragg's law

2013-09-01 Thread James Holton
Perhaps some of the confusion here arises because Bragg's Law is not a Fourier transform. Remember, in the standard diagram of Bragg's Law, there are only two atoms that are "d" apart. The full diffraction pattern from just two atoms actually looks like this: http://bl831.als.lbl.gov/~jamesh

Re: [ccp4bb] Resolution, R factors and data quality

2013-09-01 Thread Ian Tickle
On 1 September 2013 11:31, Frank von Delft wrote: > > 2. > I'm struck by how small the improvements in R/Rfree are in Diederichs & > Karplus (ActaD 2013, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689524/); > the authors don't discuss it, but what's current thinking on how to > estimate the expe

Re: [ccp4bb] Resolution, R factors and data quality

2013-09-01 Thread Frank von Delft
A bit late to this thread. 1. Juergen: Jim was not actually adopting CC*, he was asking how to make practical use of it when faced with actual datasets fading into noise. If I understand correctly from later responses, paired refinement is what K&D suggest should be best practice? 2. I'm

Re: [ccp4bb] x-ray diffraction data analysis (XDS)

2013-09-01 Thread Kay Diederichs
I forgot: you should be using FRIEDEL'S_LAW=TRUE

Re: [ccp4bb] x-ray diffraction data analysis (XDS)

2013-09-01 Thread Kay Diederichs
The HKL2000 stats look very "untypical" to me. I wonder what the completeness is. For the XDS processing, have you tried the hints given in the Optimization article in XDSwiki, in particular recycling of GXPARM.XDS and using the *_E.S.D. parameters as found in INTEGRATE.LP ? According to your