Re: [ccp4bb] frosted crystals during storage in pucks

2013-07-11 Thread Ginell, Stephan L.
My experience with xtals frosting in LN2 either in a dewar, while freezing, or in pucks, has been because the LN2 was contaminated with ice crystals The fog you see above your dewar when freezing xtals is frozen water vapor...it will fall and collect in the LN2 and also deposit on the xtals. De

[ccp4bb] Membrane Protein expression and purification

2013-07-11 Thread krish
Dear All, First of all sorry for bringing the non-ccp4 post. As our CCP4 community is filled with experts in various fields of structural biology: I'd like to get some help/suggestions from the membrane proteins expert community. I'm trying to express my membrane protein in Pichia pastoris (SMD11

[ccp4bb] Methods to reduce the model bias and increase the SAD phase

2013-07-11 Thread Yuan SHANG
Dear All, I got a Se-crystal diffracted to 3.3A. The protein is predicted to be a coiled coil. After I got the heavy atom positions from a shelxd based programs from AutoRickShaw, I run phaser and phenix.autobuild to get a initial phase shown in the attachment. I fit a "standard helix" into the d

[ccp4bb] NCS information from different crystal parameters?

2013-07-11 Thread Yuan SHANG
Dear all, Currently, I was stuck in a coiled-coil crystal. I have two Se-derivative crystals in similar crystallization conditions. And the cell parameters of these two are list below : Crystal A: P21, a=69,b=43,c=135, beta=100.7 Crystal B: P21, a=29,b=230,c=42, beta=92.2 Assuming the crysta

[ccp4bb] 5D data storage

2013-07-11 Thread Scott Classen
I stumbled across this interesting abstract today, and though I'd rekindle the perennial data storage debate on ccp4bb. Apparently these researchers have figured out a way to store 360TB of data on a "disc" (not sure of the actual dimensions). The memory crystal should have a thermal stability

Re: [ccp4bb] frosted crystals during storage in pucks

2013-07-11 Thread Nathaniel Clark
At our last synchrotron trip, the beamline staff suggested that the problem was due to moisture accumulation in the dry shipper. They recommended storing them inverted (for a few weeks, if I recall), and/or putting a supply of dry air in the dewer. Haven't tried it yet! Nat On Thu, Jul 11, 2013

[ccp4bb] frosted crystals during storage in pucks

2013-07-11 Thread
Hi All, We found if the crystals are storaged in pucks for 3-4 days in shipping dewar (with liquid nitrogen), they are almost frosted. Although I can wash them with liquid nitrogen, but it's not convenient to do that for each crystals. I doubt it's because the humid air in North West America. Doe

[ccp4bb] 2014 Gordon Research Conference and Research Seminars on Diffraction Methods in Structural Biology

2013-07-11 Thread Anastassis Perrakis
Dear all, In a bit more than a year from now, we will be running the Gordon Research Conference on Diffraction Methods in Structural Biology, this time preceded for the first time by a two-day Gordon Research Seminar, exclusively for young scientists and a few mentors. http://www.grc.org/progr

Re: [ccp4bb] off topic CM sepharose

2013-07-11 Thread Mark J van Raaij
PS In fact, the protein I mentioned, was not his-tagged, and first purification step I used (after streptomycin sulphate precipitation of DNA and dialysis) was on DEAE-sepharose at pH 8. In this, the protein surprisingly bound, I would guess via bound nucleic acid contaminants, so in effect the

Re: [ccp4bb] off topic CM sepharose

2013-07-11 Thread Mark J van Raaij
Hola Careina, filtering won't help much against aggregation, it just removes the larger aggregates, but the protein may still form small aggregates that pass the filter. and remember the pI from the sequence is only an estimation and may or may not be close to the real pI, which can only be me

[ccp4bb] postdoc MPL/RCaH

2013-07-11 Thread Konstantinos Beis
Dear All, one more position has become available in our lab. A Research Associate positions have become available in the laboratory for crystallisation and crystallographic studies on mammalian transporter in the Membrane Protein Crystallography Laboratory at the Research Complex in Harwell (RC

[ccp4bb] off topic CM sepharose

2013-07-11 Thread Careina Edgooms
Dear ccp4 bulletin board Sorry for off topic question. I'm working with a protein with pI 9.5 and yet it will not bind to a cm sepharose column when equilibrated at pH 6.5. I have removed all salt from the buffer but it still will not bind. I wonder if anyone has suggestions as to why this coul