Hi all,
Plants suffer from DNA damage caused by ultraviolet light in the same way that
humans do. Unlike us though, they cant put on a sunhat (or move to England) to
avoid the suns rays. Read more about how plants sense UV-B light and turn on a
suite of genes to protect their DNA against its d
Phaser no longer fixes the space group after the first translation
function. Phaser carries the space group with each potential solution. If
the solution is clear at the end, so will the space group be clear.
In practice, we found that the space group was not correct after the first
translatio
If there is such a quirk then it's not one we know about. We would definitely
appreciate being sent whatever is needed to reproduce the behaviour.
Dimers in orthorhombic space groups can lead to translational NCS, which is
handled much better in the latest versions of Phaser. Is it possible Phas
On Jul 9 2012, James Stroud wrote:
On Jul 9, 2012, at 11:02 AM, Tim Gruene wrote:
Dear Fulvio,
http://lmgtfy.com/?q=somore+molecular+replacement
should help you out, especially the but last paragraph of the first
link provided.
Not Found
The requested URL /~djamrog/somore.html was not f
Scaling should be the same in P222 vs. P212121. The only difference is
the exclusion of systematic absences. You may have run into some quirk
of Phaser in the way it handles multiple space groups vs. a single one.
On 07/09/12 14:06, Shya Biswas wrote:
Hi all,
I have a dataset that I scaled i
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Hash: SHA1
Hi James,
I was actually referring to the email address but just noticed that
the domain 'xtal.biochem.wisc.edu' also does not exist anymore. The
modification date 2005 is also not very encouraging for finding a
working copy of somore...
Maybe the TO
Hi all,
I have a dataset that I scaled in p212121 with cell dimension a=28.9 b=67.1
and c=93.5 however I do not get a right MR solution with this. So I went
back and scaled it in p222 space group and asked phaser to find the right
spacegroup solution for it, this time phaser gave me the right solu
On Jul 9, 2012, at 11:02 AM, Tim Gruene wrote:
> Dear Fulvio,
>
> http://lmgtfy.com/?q=somore+molecular+replacement
>
> should help you out, especially the but last paragraph of the first
> link provided.
Not Found
The requested URL /~djamrog/somore.html was not found on this server.
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Fulvio,
http://lmgtfy.com/?q=somore+molecular+replacement
should help you out, especially the but last paragraph of the first
link provided.
Best,
Tim
On 07/09/12 17:57, fulvio saccoccia wrote:
> Dear ccp4 users, does anyone know where to down
Dear ccp4 users,
does anyone know where to download SOMoRe for molecular replacement?
Thanks in advance
Fulvio Saccoccia
PhD student
Dept. of Biochemical Sciences
Sapienza University of Rome
Italy
Dear Garib,
I have run the jellybody refinement and whilst it has not reduced the Rfactors
I am going to see whether I can see anything usable in the new maps.
many thanks
james
Dr James Garnett
Centre for Structural Biology
Division of Molecular Biosciences
Level 5 Sir Ernst Chain Building
S
Dear James
It seems that at this stage you may not be able to distinguish between these
space groups. As I see they are subgroup of each other (more precisely P1 < C2
< I222 with the cell parameters you have) and it would not be easy to find out
the exact space group at this stage. Highest spac
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