I've found that predator is one of the best services of this sort:
Ref: PROTEINS: Structure, Function, and Genetics 27:329–335 (1997)
Server: http://mobyle.pasteur.fr/cgi-bin/portal.py?#forms::predator
The server is slow but the service is good.
James
On Jul 18, 2011, at 10:47 PM, Franco
Hi Obayed,
If I understood your question well,
you are looking for something called "secondary structure prediction".
I googled these keywords and found this server:
http://bioinf.cs.ucl.ac.uk/psipred/
You may find other interesting servers on the web and
some literature comparing them.
I thin
Hi Obayed,
you could give in situ protolysis a try. This is where you add a bit of
protease along with you target protein to the crystallization drop. It has
been quite successful for the folks at the SGC. Here are the relevant
references:
Dong A, et al. In situ proteolysis for protein cry
You could run your sequence through this web server first:
http://ffas.burnham.org/XtalPred-cgi/xtal.pl
Then regarding your loops you could use MUSTANG (or any other 3D alignment tool
which generates a superimposed ensemble of structures)
http://www.ncbi.nlm.nih.gov/pubmed/16736488
to identify wi
Hi all
I wrote last time but got only one feedback. I know some of you guys must have
this experience that how to delete loops from the protein. Please
help me with suggestions.
I am working with a human protein which have around 20% sequence identity with
the other proteins of the same fam
Hi all
I wrote last time but got only one feedback. I know some of you guys must have
this experience that how to delete loops from the protein. Please
help me with suggestions.
I am working with a human protein which have around 20% sequence identity with
the other proteins of the same famil
Hi all
I wrote last time but got only one feedback. I know some of you guys must have
this experience that how to delete loops from the protein. Please
help me with suggestions.
I am working with a human protein which have around 20% sequence identity with
the other proteins of the same famil
Hi all
I wrote last time but got only one feedback. I know some of you guys must have
this experience that how to delete loops from the protein. Please
help me with suggestions.
I am working with a human protein which have around 20% sequence identity with
the other proteins of the same famil
If you aren't aware of this, the use of 120 Hz LCDs to display stereoscopic
3D using Nvidia 3D Vision on Apple's Operating system(s) is/are not
supported: http://www.nvidia.com/object/3d-vision-pro-requirements.html
However, it will work flawlessly on Linux (or Windows if you're in the mood
for th
Pardon the off-topic query, but I would like to get some feedback about any
personal preference for 3D LCD monitors. I am trying to decide between the
following 3 monitors:
Samsung 2233RZ 1680 x 1050 2D and 3d Widescreen LCD Monitor
Asus VG236H 23" 2ms 1920x1080 Full HD 120Hz 3D multimedia Heig
My exabyte eliant 8 mm tape just went on the blink, so I've sent
it to Pacific Data (http://www.pacificdata.com/tape_drive.html)
for repair. They also sell tape drives, but looks like mainly newer ones.
Probably have some old ones from the repair business.
Search ebay for exabyte or "dat tape" and
Dear CCP4 community,
We have a few datasets that reside in tapes (Sony QG-112M 8 mm tape and Maxell
DDS-2 4 mm tape). I have been searching the internet for tape drives ( and
cable) but haven't found anything. Does anyone know where we can purchase
compatible tape drives for these lovely tap
Please un-subscribe me from the list!
Thank you!
Szilvia Szep
On 8 Jul 2011, at 19:13, Katherine Sippel wrote:
> I know that the PDB updated its validation server in May as described in
> their news link but it seemed to indicate an increase in output options
> rather than a change in criteria. Is anyone aware of what changes were made
> to the validatio
> Just in case anyone want to see it IRL
> http://www.youtube.com/watch?v=4sYSyuuLk5g&hd=1&t=38s
Wow! This movie is the perfect propaganda for immunology grants!
JPK
***
Jacob Pearson Keller
Northwestern University
Medical Scientist Training Program
cel:
Why don't they ask us first what would be scariest? We could really
come up with some good stuff
JPK
On Sun, Jul 17, 2011 at 2:57 PM, Eric Bennett wrote:
>
> It would be even scarier if they used an NMR structure.
> -Eric
>
>
> On Jul 16, 2011, at 1:20 PM, Robbie Joosten wrote:
>
> Hi Artem,
Original-Nachricht
Betreff:Re: [ccp4bb] Bypassing phase separation for nice crystals.
Datum: Mon, 18 Jul 2011 17:01:27 +0200
Von:Florian Sauer
An: F. Timur Senguen
CC: CCP4BB@JISCMAIL.AC.UK
Dear Timur,
one possibility to handle this problem can be the
Hi Timur,
have you tried seeding from your microstalline stuff? Might be worth to try!
Cheers,
Albert
Albert GUSKOV (Dr) | Research Fellow | Division of Structural &
Computational Biology | Nanyang Technological University
Proteos 7-01, Biopolis Drive 61, Singapore 138673 Tel: (65) 6586-9690 GMT+8h
Hi everyone,
I have been issues with a particular protein. I have been close for a while,
but yet so far.
Rather than going from a clear drop to crystal, my protein first undergoes
phase separation (large oily drops) in which one phase contains most, if not
all, of the protein. This phase separat
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