OpenGL shading language (GLSL) can be used for stream processing, and
runs on both ATI and NVidia hardware (possibly Intel graphics cards as
well, although I don't have any of those available to play around with).
> 1) There is no good non-proprietary, truly cross-platform solutions yet.
> CUDA i
Yes - reading early articles is always illuminating. Over the past few
years I have looked at Charles Galton Darwin's (yes a relation) 1914
paper and Arthur Compton's in order to understand what is really happens
to these x-rays. However, as Bayes work is being highlighted, I can't
resist giving so
My intent in my earlier response to Frances was to start a discussion
about whether there really are consistent policies numbering policies in
place and what people's experiences with those have been -- and whether
they serve the needs of the community at present. The limited feedback
so far is
Here is one like that.
Chaperoned Ubiquitylation—Crystal Structures of the CHIP U Box E3
Ubiquitin Ligase and a CHIP-Ubc13-Uev1a Complex .
Molecular Cell , Volume 20 , Issue 4 , Pages 525 - 538
M . Zhang , M . Windheim , S . Roe , M . Peggie , P . Cohen , C .
Prodromou , L . Pearl
Young-Ta
On 08:48 Sun 21 Sep , William G. Scott wrote:
> Howdie folks:
>
> If I already have shared libraries available for clipper, mmdb, ssm,
> cctbx and so forth, is it possible to get ccp4's configure to find these
> and then to build using these rather than recompiling identical or in
> some ca
HIV reverse transcriptase - I've added the first reference, but many later studies will elucidate this further.Poul1: Science. 1992 Jun 26;256(5065):1783-90. LinksCrystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor.Kohlstaedt LA, Wang J, Friedman JM, Ric
I have found the people at the pdb very helpfull and accomodating.
I think the key point is to /discuss/ the issue with them instead
of 'demanding' a certain way of deposition. The depositors may have their
reasons for certain namings, but the pdb has its reasons too, often based on
a much broad
I totally agree. "Liking likelihood" is a must read. So are some of Zbyszek
Dauter's papers and reviews on diffraction.
-Buvna
- Original Message -
From: amit sharma <[EMAIL PROTECTED]>
Date: Monday, September 22, 2008 12:36 pm
Subject: Re: [ccp4bb] Crystallogrphy today
To: CCP4BB@JISCMAI
How about:
"LII. An Essay towards solving a Problem in the Doctrine
of Chances. By the late Rev. Mr. Bayes, communicated
by Mr. Price, in a letter to John Canton, M. A. and
F. R. S."
I have the .pdf if anybody wants it...
JPK
***
Jacob Pearson Keller
Nort
Hi Jayashankar,
I think it is indeed very important to understand the very basics and
origins of the key concepts in crystallography. To that effect, I found the
paper 'Liking likelihood' by Airlie J. McCoy extremely useful, as I
always wanted to understand this concept clearly. Also, the Pr
You may be alluding to the idea of not "reinventing the wheel." I have heard
this argument against reading original sources many times, and do not agree
with it. I would say that Copernicus reinvented the wheel, as did
Lobachevski, and Einstein. Their discoveries were made, I think, at least in
Dear all,
I'm searching for examples of crystal structures that show a clear asymmetry in
the dimeric/oligomeric state. This asymmetry should not have been induced by
the crystal packing (e.g. two domains connected by a long linker packing
different, termini/loops which interact differently wit
Dear Jacob,
You are absolutely right,
I was very much excited and clear when I read Randy J.Read 's paper
Improved Fourier coefficients for maps using phases from partial structures
with errors.
its a must read paper for all students like me.
thanks
S.Jayashankar
Research Student
Institute for
On Mon, 2008-09-22 at 10:52 -0500, Jacob Keller wrote:
To understand the fundamentals of any discipline, I have always found
it
> completely worthwhile to go back to the original source, where the
idea was
> first discovered or presented. This is really, really valuable,
although not
> always po
To understand the fundamentals of any discipline, I have always found it
completely worthwhile to go back to the original source, where the idea was
first discovered or presented. This is really, really valuable, although not
always possible. I wonder whether others agree with me about this...bu
Ron--
I routinely use the PCT (pre crystallization test) to see if the protein
concentration is right for crystallization screening. That way you do not
waste too much protein in setting up screens where everything crashes out.
What else is in your protein buffer besides Tris pH 8? You mig
A few months ago, I had a similar experience as Linda Brinen that the
PDB is not very accommodating towards depositors wishes to put it
mildly. I have the impression that after many Journals are not only
requiring a PDB code as proof that the coordinates are deposited but
also mandate proof that th
From the PDB:
Begin forwarded message:
From: Jasmine Young <[EMAIL PROTECTED]>
Date: September 22, 2008 7:48:30 AM CDT
To: Todd Geders <[EMAIL PROTECTED]>
Cc: [EMAIL PROTECTED]
Subject: Re: Non-sequential residue numbering?
Dear Todd,
We encourage depositors to use sequential numbering in the
Dear All,
I have refined these atoms as water with half occupancy. I have a
ligand in the solution and most of the half occupied water molecules
form a cluster close to this ligand which is bound to my protein but
not at full occupancy. The B-values are between 9 and 15 for 0.5
occupied
wat
First check - look for anom peaks.
If your S atoms are showing up in the Dano map, them you can check
whether this is a compound with S in it. crystallisation and
cro-protectants contain a wealth of small molecules which often bind
Eleanor
9 sigma peaks are rarely due to multiple site waters
> We have a recombinant secreted glycoprotein produced in a mammalian
culture system; the native protein has 12 cysteines which form 6
intramolecular disulfide bonds. We have introduced a new cysteine
residue at a surface position, with the intention of targeting this
residue for an in vitro s
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