Thanks to Pete and Juergen - seems that the
GUI sticks the offending
domain 1 -
domain 2 -
line in the script. Both the linux and windows versions did that.
Is this a GUI error or is user error?
Thx, br
-
Dear All,
trying to run DM in NCS averaging mode from
You could try Rapper/Rampage
http://mordred.bioc.cam.ac.uk/~rapper/
Trevor
--
Dr Trevor Huyton
Research Fellow
Monash University
Department of Biochemistry and Molecular Biology
School of Biomedical Sciences, Faculty of Medicine
Clayton, VIC 3800
AUSTRALIA
office +61 (0) 3 99058022
mobile +61 0
Dear All,
trying to run DM in NCS averaging mode from GUI.
Problem is error message:
dm: (RCARDS) AVER: enter indentity matrix first
There are 2 domains (monomers) related by NCS
The same message appears irrespective of whether
a) I do enter 0,0,0, 0,0,0 for the first domain
and then the secon
Hi Tiancen,
provided that you know for sure that your Gly->Pro mutation has been
incorporated (see Artem's comment) I would spend some more time
modeling your Pro.
Here are some things to consider:
(1) If the view of the model you provided has not fooled me, I
believe that the main-chain
In ARP/wARP 7.0 there is a loop building program that will build only
Rama-sensible conformations.
Its mostly structure driven and not density driven, but:
I never dared to try it at 4.5 A though.
A.
On 18 Oct 2007, at 20:55, seglynn wrote:
Dear CCP4ers,
I am attempting to build a short lo
Hi,
How big is the gap?
Did you try lego_ca, lego_auto_mc or lego_loop in O. They will generate
fragments for you to try from its database with good geometries. You can then
select the one which you think fits best in the map.
You can also try Xpleo: http://smb.slac.stanford.edu/~vdbedem/
Dear CCP4ers,
I am attempting to build a short loop section into a low resolution map (4.5A).
The electron density is clearly present but the low resolution is making it
difficult to fit anything with sensible Ramachandran angles. Does anyone know
of a program that will generate a series of potent
Dear All,
Does anybody have (or know how to get) a def.site file for HKL2000 that works
with the .sfrm images
from Bruker's Proteum Pt135 CCD detector?
Thanks in advance,
Rene
Beamline Scientist Position
MX group at Diamond Light Source, UK
This position will be based on a state-of-the art macromolecular
crystallography beamline currently being commissioned. The beamlines use
in-vacuum undulators to generate X-rays in the range of 5-25 keV.
Kirkpatrick-Baez mirror
