Re: [ccp4bb] Morphing with mutations

2007-10-05 Thread Mario A. Bianchet
Mario You guys don't be so modests. Implement the "idea" could take me quite some time and you guys does it so easy (at least for me point of view :-) and nice. And is a good oportunity for me to Thanks for your many ideas... Regards Mario Gerard DVD Kleywegt wrote: Quite a beauty.

Re: [ccp4bb] Domain swapping..... and unswapping.

2007-10-05 Thread Lin Chen
Dear Miriam, We have seen this in our study of the FOXP2/DNA complexes (Stroud et al., Structure, 14, 159-16, 2006). Lin Lin Chen, Ph.D. Associate Professor Molecular and Computational Biology University of Southern California 1050 Childs Way, Los Angeles, CA 90089 Phone: 213-821-4277 Fax: 213

Re: [ccp4bb] Domain swapping..... and unswapping.

2007-10-05 Thread Stefan Arold
Dear Miriam I had that case of the 4-helix bundle FAT domain of Focal Adhesion Kinase. It crystallised as a helix-swapped dimer (PDB ID 1k04, 1mol/ASU), as a non-swapped 4helix bundle (1ow7, 3 mol/ASU), and as a hybrid, where 2 mols / ASU were not swapped, and one was swapped (1ow6). With be

[ccp4bb] Structural Biology Post-Doctoral Position

2007-10-05 Thread Spiller, Benjamin
Dear CCP4 Users, We have an opening for one federally funded post-doctoral position for a structural biologist or protein biochemist to study bacterial voltage-gated sodium channels. The ideal candidate will be self-motivated, creative, organized, and experienced in crystallography or protei

Re: [ccp4bb] Domain swapping..... and unswapping.

2007-10-05 Thread Myron Smith
Hi Miriam, If you check PDB ID 1K50 you would see that the asymmetric unit contains two monomers and a domain swapped dimmer. The reference if you want to read the paper is: O`Neill, J.W., Kim, D.E., Johnsen, K., Baker, D., Zhang, K.Y. Single-site mutations induce 3D d

Re: [ccp4bb] Domain swapping..... and unswapping.

2007-10-05 Thread Phil Evans
We've had a case recently (unpublished) with 4 molecules in the asymmetric unit, two self-contained and two domain-swapped (asymmetrically) ... anything is possible, though in this case the "domains" are really separate proteins expressed as an artificial fusion Phil On 5 Oct 2007, at 1

[ccp4bb] Domain swapping..... and unswapping.

2007-10-05 Thread Miriam-Rose Ash
Hey all, Sorry for the off-topic post, but I'm just wondering if anyone has heard of any examples in which a single crystal contained both the domain-swapped and unswapped forms of a protein? Thanks! Miriam

[ccp4bb] Beamtime at SLS X06SA

2007-10-05 Thread Clemens Schulze-Briese
= SYNCHROTRON BEAM TIME FOR MACROMOLECULAR CRYSTALLOGRAPHY AT THE UNDULATOR BEAMLINE X06SA AT SLS FROM JANUARY-APRIL 2008 = - PILATUS 6M pixel detector available for u

Re: [ccp4bb] Morphing with mutations

2007-10-05 Thread Mario A. Bianchet
Warren, Quite a beauty... what a nice way to show the effect of the mutation in the binding site. really nice, Mario Warren DeLano wrote: http://delsci.com/morph It's a start... -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Gerard DVD Kle