Thanks for the advice. You were right in that the background designator was
not the only thing defining the "background". The fog designator was the
problem, as it apparently put a black fog behind my molecule. Once I
removed it, I got a nice transparent background (original header below).
#in
For povray, background is implicit (it exists as black if unspecified).
According to the docs "when the alpha channel is turned on, all areas of the
image where the background is partly or fully visible will be partly or fully
transparent". I haven't used ccp4mg, but it might be making a sphere
Apologies for the non-CCP4 question, but I think this would of interest
to anyone thinking of purchasing the 007 from Rigaku.
To praise the instrument, we have been able to evaluate crystals that
were previously only assessable at the synchrotrons. The intensities
are ten times that of the RU-
Dont know how to do this in CCP4MG or POVRAY but you can do it in GIMP
with the following
Layer>Transparency>Add Alpha Chanel
Select>By color (Select the background with your mouse)
Edit>Cut (to remove the background)
-Original Message-
From: CCP4 bulletin board on behalf of Ray Bou
Hi all,
I am generating images using ccp4mg (which is wonderful by the way), but I
can not figure out how to generate a povray input file that will yield an
image with a transparent background. Getting a transparent background using
the screen snapshot works fine, but I would like to have a rend
Dear Paul,
thanks for confirming that this is a benign remark from Coot. In the
meantime, I
got replies from other users who are seeing the same thing on their systems.
best regards
Savvas
Quoting Paul Emsley <[EMAIL PROTECTED]>:
On Fri, 2007-06-01 at 14:35 +0200, Savvas Savvides wrote:
De
Crystallization: Focus on Membrane Proteins
June 19-23, 2007
http://www.nsls.bnl.gov/newsroom/events/workshops/2007/crys/
A reminder to those who would like to attend the Crystallization Course: focus
on Membrane Proteins
at Brookhaven National Laboratory. Today is the last day for registering
Dear CCP4 users and developers,
upon starting up Coot-0.3.1 as distributed in the CCP4_v6.0.2 binaries for Red
Hat 8 we get the following:
current_exe_dir is /usr/local/CCP4_v6.0.2/Coot-0.3.1/bin
COOT_PREFIX is /usr/local/CCP4_v6.0.2/Coot-0.3.1
/usr/local/CCP4_v6.0.2/Coot-0.3.1/bin/coot-real: /usr
Dear Jan Dohnalek
IMC Prague
We bought an Oryx 8 last year, and have been pleased with it. It's
robust and I can fix many things myself. The best thing though have been
that every time I have problems, e.g. after version update I have had
support immediately - so that the robot didn't have weeks o
Hi Graeme,
How is your data binned?
I don't claim to be any statistician, but I seem to remember being told by
such an individual that you need a decent number of reflections to be able
to calculate a accurate/reliable second moment - and if, in your low-res
bins, you have relatively few reflect
Have you looked at http://www.ccp4.ac.uk/dist/html/pxmaths/index.html
It is an introduction ..
Eleanor
Randy talked about deviations at the CCP4 study weekend this year..
Winter, G (Graeme) wrote:
Hi Folks,
I was wondering if there is a document somewhere explaining some of
the more intere
We are pleased to announce the release of the Clipper2 module as part of
the CCP4 6.0.2 public release. The Clipper2 module includes Pirate
v0.4.9, Buccaneer 0.7.1, and the Clipper 2.0 software library including
the Clipper Utilities. This software is kindly provided by Kevin Cowtan.
The Clipper2
Hi Folks,
I was wondering if there is a document somewhere explaining some of the
more interesting things which can be interpreted from the plot of second
moment of Z = I'/ anywhere? I've looked around and I can't find much
beyond the things pertaining to twinning, where it will have the magical
v
We are thinking about getting the Oryx8 robot (Douglas Instruments) for
crystallisation experiments.
Is anyone out there with any kind of experience with these?
Jan Dohnalek
IMC Prague
Hi
In the same way the Toyota MRD-2 doesn't sell in France?
MRD would indeed be a poor name. For French scientists it might be difficult
to get funding for an MRD experiment
Regards
Yves
--
Prof. Yves Muller P
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