[Bioc-devel] missing devel experiment data builds

Hi, I just wanted to ask whether there might be a problem with the devel builds for the experimental data packages. Judging from http://bioconductor.org/checkResults/3.9/data-experiment-LATEST/# it seems that the latest snapsho

Re: [Bioc-devel] missing devel experiment data builds

next build iteration (experiment data builds are scheduled to >> run on Sundays, Tuesdays, and Thursdays only). >> >> H. >> >>> On 1/28/19 15:31, Charlotte Soneson wrote: >>> Hi, >>> I just wanted to ask whether there might be a problem with t

Re: [Bioc-devel] GenomicFeatures and/or TxDb.Hsapiens.UCSC.hg19.knownGene issue: missing tibble

Hi Leo, Martin, it looks like this is related to an issue with the remotes package: https://github.com/r-lib/remotes/issues/296 . It gets the installation order wrong, and tries to install source packages before binaries. This can be a problem with

Re: [Bioc-devel] GenomicFeatures and/or TxDb.Hsapiens.UCSC.hg19.knownGene issue: missing tibble

> >>Likely this issue only happens on Windows and macOS because of the >>availability of some packages in source form and others in binary >>form, unlike only using source versions in the Bioconductor docker >>run. However, maybe I need some other code to get all the >>d

Re: [Bioc-devel] GenomicFeatures and/or TxDb.Hsapiens.UCSC.hg19.knownGene issue: missing tibble

!= 0]) >> >> >>This still leads to TxDb.Hsapiens.UCSC.hg19.knownGene failing to >>install because GenomeInfoDbData is not available on both macOS and >>Windows (again, this doesn't fail on the Bioconductor devel docker). >>Here's for example

Re: [Bioc-devel] Failing Travis build on bioc-devel

Hi Waldir, try to delete the travis cache (under More Options - Caches) and restart the build. That helped for me. Best, Charlotte > On 7 May 2020, at 11:33, Waldir Leoncio Netto > wrote: > > Dear fellow developers, > > I have a package which has been failing on Travis CI's bioc-devel build

[Bioc-devel] EuroBioC2022 organizing committee

Dear Bioconductor community members, we are inviting users and developers to join the organization committee for EuroBioC2022 - the European Bioconductor Conference. The current plans are for an in-person/hybrid conference in Heidelberg, Germany, on March 16-18 2022. The committee meets biweekl

[Bioc-devel] Bioconductor Technical Advisory Board Nominations Open

Do you want to join the Bioconductor Technical Advisory Board, or do you know someone who would be a great fit? Then fill this short form (if you're nominating someone else, please first confirm that they are interested) before May 31 (at midnight in a time zone of your choice): https://forms.g

Re: [Bioc-devel] Python module "tensorflow_probability" not found

Hi, in case it's useful: we have a package (orthos) in review (https://github.com/Bioconductor/Contributions/issues/3042) which uses basilisk to set up a conda environment with tensorflow and keras. It builds and runs fine both on GitHub Actions (GitHub repo here: https://github.com/fmicompbi