Re: [Bioc-devel] WARNING from Rgl package

2025-04-04 Thread Martin Grigorov
Hi, On Fri, 4 Apr 2025 at 14:00, Matteo Tiberti via Bioc-devel < bioc-devel@r-project.org> wrote: > Dear all, > > We are seeing the same warning from the builders for our MoonlightR and > Moonlight2R packages, on kungpeng2 only: > > * checking whether package ‘Moonlight2R’ can be installed ... WA

[Bioc-devel] WARNING from Rgl package

2025-04-04 Thread Matteo Tiberti via Bioc-devel
Dear all, We are seeing the same warning from the builders for our MoonlightR and Moonlight2R packages, on kungpeng2 only: * checking whether package �Moonlight2R� can be installed ... WARNING Found the following significant warnings: Warning: 'rgl.init' failed, will use the null device. War

Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21

2025-04-04 Thread Kern, Lori via Bioc-devel
Because of the way the builders are set up we only see CRAN dependency disappear when we do a new install of R or manually flush the repository. Therefore there can be a delay in seeing these failures/ERROR's. If it is due to a Bioconductor package, we normally notify reverse dependencies on

[Bioc-devel] BiocParallel Error in SingleCellAlleleExperiment on palomino7/8

2025-04-04 Thread Jonas Schuck
Dear Community, Im running into an error in the vignette of the “ *SingleCellAlleleExperiment*” Software package on the *palomino7/8* windows distribution. Error report in short: Quitting from lines 229-238 [unnamed-chunk-8] (scae_intro.Rmd) Error: processing vignette 'scae_intro.Rmd' failed w