Dear Community,
Im running into an error in the vignette of the “
*SingleCellAlleleExperiment*” Software package on the *palomino7/8* windows
distribution.
Error report in short:
Quitting from lines 229-238 [unnamed-chunk-8] (scae_intro.Rmd)
Error: processing vignette 'scae_intro.Rmd' failed with diagnostics:
BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote error:
Error in file(file, "rt"): cannot open the connection
I was not yet able to reproduce the error locally.
In the vignette, we load example data from the "*scaeData*" ExperimentHub
package. Since I can see `scaeData` listed among the installed packages on
palomino7/8 and the vignette runs as expected locally on a windows system,
I assume its not the actual lack of files that throw this error. Could
someone please confirm whether *scaeData* is actually available in the
palomino testing distributions?
Additionally, I’ve read that windows-based systems may run into issues with
parallelization using BiocParallel, however the function where the error
supposedly arises uses *BiocParallel::SerialParam()* by default.
Since this error occurs only on the windows distribution, I wanted to ask
if anyone has encountered a similar issue or has insights / suggestions on
how to best debug this error?
Any help would be much appreciated!
Best,
Jonas
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