Hello, I am working with the new human T2T-CHM13v2.0 assembly and while
a BSgenome package already exists
(BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0), I could not find the
corresponding TxDb and OrgDb packages. Is there any information when
they may also become available so it is easier to work with t
Good question. I believe these will be forthcoming soon. In the mean time
you can
create your own. See, for example
https://github.com/vjcitn/BiocT2T/blob/devel/inst/scripts/makeTxDb.R
It's an active area so you can pull a gff file from
https://s3-us-west-2.amazonaws.com/human-pangenomics/inde
