Good question. I believe these will be forthcoming soon. In the mean time you can create your own. See, for example
https://github.com/vjcitn/BiocT2T/blob/devel/inst/scripts/makeTxDb.R It's an active area so you can pull a gff file from https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=T2T/CHM13/assemblies/annotation/ and adjust the code noted above for the TxDb. For the org.db I have to get back to you. On Sun, Dec 10, 2023 at 12:06 PM Christian Arnold via Bioc-devel < bioc-devel@r-project.org> wrote: > Hello, I am working with the new human T2T-CHM13v2.0 assembly and while > a BSgenome package already exists > (BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0), I could not find the > corresponding TxDb and OrgDb packages. Is there any information when > they may also become available so it is easier to work with the new > genome for packages like ArchR, which support a custom genome but need > these standard annotation packages for their creation? > > > Thanks a lot for any information regarding this! > > Best, Christian > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
