[Bioc-devel] Changing package names

2021-08-17 Thread Kramer, Nicole Emma
Hello all, My submitted package BentoBox and its associated data package BentoBoxData have been accepted and were just added to Bioconductor's git repository. Unfortunately, my group and I would like to change the names of these packages/repositories. What would be the appropriate process to ch

Re: [Bioc-devel] CITATION error

2021-08-17 Thread Shraddha Pai
Hi Hervé, Thank you for catching the discrepancy between release and dev builds! How strange - I usually change dev and release build in sync, so wonder how that happened. I updated the file and committed -hopefully it fixes the issue. Best,Shraddha On Mon, Aug 16, 2021 at 10:27 PM Hervé Pagès w

Re: [Bioc-devel] Changing package names

2021-08-17 Thread Vincent Carey
Please reconsider. The names of your packages enter components of a metadata collection that must be manually altered by our core development staff to accommodate package name changes. While it is easy to change names of entities in programs and local file systems, our package ingestion, review, c

Re: [Bioc-devel] ERROR in the building report of APAlyzer Dev (1.7.3)

2021-08-17 Thread Ruijia Wang
Hi, Just trying to give a following up on this issue, any comments/suggestions on it? Thanks. On Sun, Aug 15, 2021 at 8:24 PM Ruijia Wang wrote: > Hi BioC-devel, > > I am the author of the Bioconductor package APAlyzer ( > https://bioconductor.org/packages/release/bioc/html/APAlyzer.html). I >

Re: [Bioc-devel] ERROR in the building report of APAlyzer Dev (1.7.3)

2021-08-17 Thread Ruijia Wang
Thanks so much for your explanation! I will probably wait for the newer version of Rsubreads to fix it. On Mon, Aug 16, 2021 at 9:16 PM Hervé Pagès wrote: > Hi Ruijia, > > I think this is due to recent changes to Rsubread. You can actually see > the same error here for Rsubread: > > > > http://b