Hi, Just trying to give a following up on this issue, any comments/suggestions on it? Thanks.
On Sun, Aug 15, 2021 at 8:24 PM Ruijia Wang <rjwang.bioi...@gmail.com> wrote: > Hi BioC-devel, > > I am the author of the Bioconductor package APAlyzer ( > https://bioconductor.org/packages/release/bioc/html/APAlyzer.html). I > current noticed there is an ERROR in the building report of our latest dev > version (1.7.3) on the page of Bioconductor ( > http://bioconductor.org/checkResults/devel/bioc-LATEST/APAlyzer/nebbiolo2-checksrc.html > ). > >> >> * Error: object 'fout_annot' not found** Backtrace:* >> >> * 1. └─APAlyzer::PASEXP_IPA(...) test_IPA_analysis.R:10:8* >> * 2. └─Rsubread::featureCounts(...)** 3. └─base::file.remove(fout_annot)* > > > However, I can not repeat this error using R 4.1 and Bioconductor 3.14 on > my end with either *R CMD check* or *BiocCheck("APAlyzer_1.7.3.tar.gz").* And > I don't recall any of the code updating would trigger the error of > *base::file.remove()*. Could you help me to figure out how to fix/bypass > this issue in the building report of Bioconductor? Thanks in advance! > > Best, > Ruijia > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
