[Bioc-devel] Last Day to commit to Release 3_8 branch

2019-04-15 Thread Shepherd, Lori
Today is the last day to commit any changes to the release 3.8 branch. The branch will be frozen to commits as of 4:45 PM EST. Thank you. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New Yo

Re: [Bioc-devel] TIMEOUT and tokay2 require Rmpi

2019-04-15 Thread Shepherd, Lori
Normally CRAN dependencies are downloaded automatically. We have been experiencing some connectivity issues on the builders connecting to CRAN which has caused a number of additional TIMEOUTS and the inability to currently download additional dependencies. We are working to resolve the issue s

Re: [Bioc-devel] TIMEOUT and tokay2 require Rmpi

2019-04-15 Thread Pages, Herve
Hi, See https://github.com/Bioconductor/Contributions/issues/1087#issuecomment-483315908 for why the package has a timeout on malbec2. It's a snow/doSNOW/Rmpi problem. Cheers, H. On 4/14/19 22:53, 郝洁 wrote: Hi, Our package SINCE has got TIMEOUT notice several times, but it only took a few

Re: [Bioc-devel] New build report

2019-04-15 Thread Alina Selega
Hi, First of all, thank you very much for pointing me to the resources -- and apologies for my confusion! I have now applied changes correctly to both RELEASE_3_8 and devel branches in order to fix the warnings on tokay2 arising from missing links when calling external functions. By looking at th

Re: [Bioc-devel] New build report

2019-04-15 Thread Pages, Herve
Hi Alina, For some unknown reason tokay1 stopped building in the middle of the night so we have no results for Windows on the RELEASE_3_8 build report today. The cause of tokay1's failure is under investigation. Sorry for the inconvenience, H. On 4/15/19 09:23, Alina Selega wrote: > Hi, > >

[Bioc-devel] Weird issue with the repo

2019-04-15 Thread Hamed Haseli
Dear All, I am the maintainer of the package PhenStat and recently fixed some issues and tried to push the code into the repository. It was initially okay but suddenly stopped with the error below: git.exe push --progress "origin" master:master fatal: remote

Re: [Bioc-devel] Weird issue with the repo

2019-04-15 Thread Hamed Haseli
Dear All, Sorry for emailing again. We identified the issue and solved the problem. Thanks. Regards, Hamed. Hamed Haseli.M | Hamed Haseli.M, PhD (Statistics) | Data Scientist, Mouse Informatics | E: hame...@ebi.ac