Re: [Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes

2013-07-16 Thread Robert Castelo
hi Martin, i have tried it out by simply adding the code snippet you specify below to the preamble of one of the vignettes of 'qpgraph', concretely the one entitled 'qpTxRegNet.Rnw' and once the .tex is generated, the processing with LaTeX gives the following error: = (/opt/

Re: [Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes

2013-07-16 Thread Ou, Jianhong
Hi Martin, This is a great package. When I insert the figure to the vignettes, the codes will not run two times. Great! One question is that how could I show "@" in the vignettes? And is there any methods to draw multiple figures in one chunk and then insert them separately? Yours sincerely, Ji

Re: [Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes

2013-07-16 Thread Martin Morgan
On 07/16/2013 06:43 AM, Robert Castelo wrote: hi Martin, i have tried it out by simply adding the code snippet you specify below to the preamble of one of the vignettes of 'qpgraph', concretely the one entitled 'qpTxRegNet.Rnw' and once the .tex is generated, the processing with LaTeX gives the

Re: [Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes

2013-07-16 Thread Martin Morgan
On 07/16/2013 07:11 AM, Ou, Jianhong wrote: Hi Martin, This is a great package. When I insert the figure to the vignettes, the codes will not run two times. Great! One question is that how could I show "@" in the vignettes? And is there any methods to draw multiple figures in one chunk and then

Re: [Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes

2013-07-16 Thread Robert Castelo
hi Martin, thanks for spotting the problem, the fix works great, i've commited the change to the devel branch. regarding my comments, of course the R files are the quickest route to reproduce the vignette but i was thinking more about the less experienced R user who may find it difficult to s

Re: [Bioc-devel] BiocStyle for styling Sweave (and other?) vignettes

2013-07-16 Thread Kasper Daniel Hansen
This is a great idea. Comments 1) Latex dependencies. Hopefully this style will be adopted throughout Bioc, so any latex dependencies will be actual dependencies for building and checking packages. Not everyone works on a system where everything is installed, nor does everyone know how to fix a