Hi,
In the QA report of the 'ShortRead' package, a short sequential integer
labeling for referencing the samples/files throughout the report is
created by default. Would it be reasonable/possible to allow for other
optional names to label the samples to make the results of the report
easier
Hi,
Since the attached file didn't make it all the way through to the
mailing list, you can find it at
http://www.ebi.ac.uk/~jgehring/share/shortRead-pkg/0001-Example-patch-for-naming-samples-in-BAMQA.patch.
Best wishes
Julian
On 02/12/2013 03:23 PM, Julian Gehring wrote:
Hi,
In the QA r
On 02/12/2013 06:29 AM, Julian Gehring wrote:
Hi,
Since the attached file didn't make it all the way through to the mailing list,
you can find it at
http://www.ebi.ac.uk/~jgehring/share/shortRead-pkg/0001-Example-patch-for-naming-samples-in-BAMQA.patch.
Thanks Julian the request seems reasonab
On 02/12/2013 10:04 AM, Tim Triche, Jr. wrote:
> re: '[BioC] question about Gviz' thread fallout:
>
> Yesterday I rolled a relatively simple programmatic way to label UCSC
> KnownGene entries with their symbols. However, some isoforms (e.g. some
> for NRIP1 and CDKN2B) seem to be missing from the
Hi Marc,
Thanks a lot for your help, I will keep you updated on this.
Tengfei
On Mon, Feb 11, 2013 at 4:21 PM, Marc Carlson wrote:
> **
> Hi Tengfei,
>
> Ugh. It seems that they have cooked up yet another new way to represent
> that same kind of data inside of a gff file. :(I am sad to s
Hi Dan,
I can see the issue is resolved now! I will update my version of R-devel, too.
Thanks,
Norman
On Fri, Feb 8, 2013 at 1:19 PM, Dan Tenenbaum wrote:
> On Thu, Feb 7, 2013 at 8:48 PM, Dan Tenenbaum wrote:
>> Hi Norman,
>>
>>
>> On Thu, Feb 7, 2013 at 6:59 PM, Norman Pavelka
>> wrote:
>>
Hi Dan,
I actually just installed the latest version of R-Devel (r61902) and
used biocLite("plgem") to download and install the latest version of
my package from the server. Although there are no errors or warnings
on the Bioc build/check report, my package still lacks the PDF version
of the vigne
Hi Norman,
On Tue, Feb 12, 2013 at 10:35 PM, Norman Pavelka
wrote:
> Hi Dan,
>
> I actually just installed the latest version of R-Devel (r61902) and
> used biocLite("plgem") to download and install the latest version of
> my package from the server. Although there are no errors or warnings
> on
