Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-13 Thread Aaron Lun
While we wait for the changes to come online: would you be open to PRs to workflow.md? I was thinking of making a nested list for the Introduction/part 1/part 2/part 3, which is a bit nicer to read. -A On 12/12/17 22:11, Andrzej Oleś wrote: > Thanks for you feedback Aaron! > > On Tue, Dec 12,

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-12 Thread Andrzej Oleś
Thanks for you feedback Aaron! On Tue, Dec 12, 2017 at 9:49 PM, Aaron Lun wrote: > Thanks Andrzej. > > > Thank you. I've edited the workflow index page by introducing a separate > > "Single-cell Workflows" section, and by substituting the previous link to > > your workflow by links to the indivi

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-12 Thread Aaron Lun
Thanks Andrzej. > Thank you. I've edited the workflow index page by introducing a separate > "Single-cell Workflows" section, and by substituting the previous link to > your workflow by links to the individual parts. Great, I'm looking forward to seeing it. Do you know how frequently the index pa

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-12 Thread Andrzej Oleś
Hi Aaron, Thank you. I've edited the workflow index page by introducing a separate "Single-cell Workflows" section, and by substituting the previous link to your workflow by links to the individual parts. As discussed during EuroBioc, I'm happy to restructure the index page by grouping workflows

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-12 Thread Aaron Lun
The split-up workflows seem to have built successfully: http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/ Is there something I have to do to get a blurb specific to each vignette, as observed for "Annotation_Resources" vs "Annotating_Genomic_Ranges"? The various vignettes are order

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-12 Thread Aaron Lun
The split-up workflows seem to have built successfully: http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/ The various vignettes are ordered pedagogically, so the order in which they are presented in the workflow page might require some manual specification. It would also be nice if

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-11 Thread Aaron Lun
Thanks Val: Obenchain, Valerie wrote: > Hi, > > On 12/11/2017 08:49 AM, Aaron Lun wrote: >> Following up on our earlier discussion: >> >> https://stat.ethz.ch/pipermail/bioc-devel/2017-October/011949.html >> >> I have split the simpleSingleCell workflow into three (four, if you >> include the int

Re: [Bioc-devel] splitting simpleSingleCell into self-contained vignettes

2017-12-11 Thread Obenchain, Valerie
Hi, On 12/11/2017 08:49 AM, Aaron Lun wrote: Following up on our earlier discussion: https://stat.ethz.ch/pipermail/bioc-devel/2017-October/011949.html I have split the simpleSingleCell workflow into three (four, if you include the introductory overview) self-contained Rmarkdown files. I am pre