IMHO, Sweave handlers (drivers) were a bad design in the sense that
extensions based on Sweave have to copy a large amount of source code
from the utils package. You can compare
https://github.com/eusebe/ascii/blob/master/R/RweaveAscii.r to
https://github.com/wch/r-source/blob/trunk/src/library/uti
On Wed, Aug 28, 2013 at 5:50 AM, Wolfgang Huber wrote:
>
> Hi
>
> is there already a best practice (example?) for how to deliver vignettes
> written in org-mode (http://orgmode.org) in Bioconductor packages?
>
> (This would also require that emacs and its ESS and org modes are installed
> on the
My impression is that org-mode was designed for very general purposes,
and it might be too general for R package vignettes, so is Dexy. For
vignettes, we use only one language (R) and one document format
(historically LaTeX, and nowadays also Markdown/HTML) in most cases.
Multiple input/output form
On Wed, Aug 28, 2013 at 5:28 AM, Martin Morgan wrote:
> On 08/28/2013 02:50 AM, Wolfgang Huber wrote:
>
>>
>> Hi
>>
>> is there already a best practice (example?) for how to deliver vignettes
>> written in org-mode (http://orgmode.org) in Bioconductor packages?
>>
>
> Three possibilities come to
Wolfgang Huber embl.de> writes:
>
>
> Hi
>
> is there already a best practice (example?) for how to deliver vignettes
written in org-mode
> (http://orgmode.org) in Bioconductor packages?
>
> (This would also require that emacs and its ESS and org modes are
installed on the build servers.)
W
On Wed, Aug 28, 2013 at 8:25 AM, Martin Morgan wrote:
> On 08/28/2013 07:38 AM, Wolfgang Huber wrote:
>>
>> Hi Martin,
>> thanks! Both of these sound doable, we'll explore. What was the third one?
>
>
> To clarify, the intermediate form in option 2 should ideally still contain
> executable code ch
On 08/28/2013 07:38 AM, Wolfgang Huber wrote:
Hi Martin,
thanks! Both of these sound doable, we'll explore. What was the third one?
To clarify, the intermediate form in option 2 should ideally still contain
executable code chunks -- Rmd or Rnw, rather than md or tex. One drawback of
this opti
Hi Martin,
thanks! Both of these sound doable, we'll explore. What was the third one?
Best wishes, Wolfgang
On 28 Aug 2013, at 14:28, Martin Morgan wrote:
> On 08/28/2013 02:50 AM, Wolfgang Huber wrote:
>>
>> Hi
>>
>> is there already a best practice (example?) for how to deliver vigne
On 08/28/2013 02:50 AM, Wolfgang Huber wrote:
Hi
is there already a best practice (example?) for how to deliver vignettes
written in org-mode (http://orgmode.org) in Bioconductor packages?
Three possibilities come to mind.
Implement the equivalent of the knitr package, preferably without ext
This isn't a direct answer to the question, but I recently learned of
this project:
http://www.dexy.it/
Basically, it is a giant set of filters that runs on text-based files
(MANY formats, including org) to produce outputs (MANY formats).
These filters include programming languages (including R)
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