Wolfgang Huber <whuber <at> embl.de> writes: > > > Hi > > is there already a best practice (example?) for how to deliver vignettes written in org-mode > (http://orgmode.org) in Bioconductor packages? > > (This would also require that emacs and its ESS and org modes are installed on the build servers.)
Wolfgang, ravel will translate org-mode to Sweave, knitr, or similar formats. See https://github.com/chasberry/orgmode-accessories As currently implemented, it usually requires that the chunk options be manually added to the org-mode source blocks in a header line. That is, the org-mode header arguments are not translated to Sweave/knitr chunk options. This can be automated, but I've not had a reason to do so yet. You can see the 'example-1.Rnw' from the Sweave manual rendered as org-mode that ravel can translate back to Sweave at: https://raw.github.com/chasberry/orgmode-accessories/master/example-1-Rnw.org The part that gets turned into Sweave starts at the line '* Sweave Example 1'. HTH, Chuck == _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
