Re: [Bioc-devel] issue to open a file from UCSC

2024-02-09 Thread Robert Castelo
If you're not directly accessing this URL, but through GenomeInfoDb as an upstream dependency, this has been recently fixed a couple of days ago: https://github.com/Bioconductor/GenomeInfoDb/commit/77f3c97cb78607a169b24ab1f827453e04cdd6a0 and the updated version 1.39.6 of GenomeInfoDb should be

Re: [Bioc-devel] issue to open a file from UCSC

2024-02-08 Thread Zuguang Gu
You can use https://hgdownload2.soe.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz instead. On Thu, 8 Feb 2024 at 20:03, Martin, Tiphaine via Bioc-devel < bioc-devel@r-project.org> wrote: > Hi, > > I have an error in