You can use https://hgdownload2.soe.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz
instead. On Thu, 8 Feb 2024 at 20:03, Martin, Tiphaine via Bioc-devel < bioc-devel@r-project.org> wrote: > Hi, > > I have an error in the package compilation because of issues accessing a > file from UCSC. > Are you aware of such type of issue? What do I need to do? > > Quitting from lines 337-345 [cometwebPlot] (coMET.Rnw) > Error: processing vignette 'coMET.Rnw' failed with diagnostics: > error in evaluating the argument 'object' in selecting a method for > function 'getTable': cannot open URL ' > https://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz' > > Thanks, > Tiphaine > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
