Re: [Bioc-devel] Rmarkdown built html vignette not included in final package tarball

2014-10-06 Thread Dan Tenenbaum
- Original Message - > From: "Leo Lahti" > To: bioc-devel@r-project.org, "Git Svn Bridge" > Sent: Monday, October 6, 2014 10:11:55 AM > Subject: Re: Rmarkdown built html vignette not included in final package > tarball > > > Hi Dan, good to hear. I guess you checked that the html fil

Re: [Bioc-devel] Rmarkdown built html vignette not included in final package tarball

2014-10-06 Thread Leo Lahti
Hi Dan, good to hear. I guess you checked that the html file is in the package after build? For me the build is ok but the html file does not appear. If you get the html file during build, then the pandoc linking issue should cause my problems. In Ubuntu 14.04 running "sudo apt-get install pandoc"

Re: [Bioc-devel] Rmarkdown built html vignette not included in final package tarball

2014-10-06 Thread Leo Lahti
Thanks Sean, in fact I had already bumped into this very useful post. I tried to make the changes you suggested, yet the html file is not built as it should. Any pointers to public code for packages with successful automated builds of html vignettes from Rmd ? The current version of my package v

Re: [Bioc-devel] Rmarkdown built html vignette not included in final package tarball

2014-10-06 Thread Sean Davis
Hi, Leo. I think you'll need to include the VignetteIndexEntry and VignetteEngine as the first lines of your vignette, enclosed in an HTML comment. You'll also need to adjust your DESCRIPTION file slightly. Though not meant to be authoritative, I put together the details that worked for me here: