Thanks Sean, in fact I had already bumped into this very useful post. I tried to make the changes you suggested, yet the html file is not built as it should.
Any pointers to public code for packages with successful automated builds of html vignettes from Rmd ? The current version of my package vignette is in: https://github.com/microbiome/microbiome/blob/master/vignettes/vignette.Rmd For some reason the html file fails to build during package build as it should. On Mon, Oct 6, 2014 at 3:16 PM, Sean Davis <sdav...@mail.nih.gov> wrote: > Hi, Leo. > > I think you'll need to include the VignetteIndexEntry and VignetteEngine > as the first lines of your vignette, enclosed in an HTML comment. You'll > also need to adjust your DESCRIPTION file slightly. Though not meant to be > authoritative, I put together the details that worked for me here: > > > http://watson.nci.nih.gov/~sdavis/blog/convert_from_sweave_to_r_markdown_vignettes/ > > Sean > > > On Mon, Oct 6, 2014 at 8:23 AM, Leo Lahti <leo.la...@iki.fi> wrote: > >> Dear list, >> >> I have built html vignettes from Rmd files >> >> For this I have added the following lines in vignette start: >> >> --- >> title: "my vignette" >> author: "N.N" >> date: "`r Sys.Date()`" >> output: rmarkdown::html_vignette >> vignette: > >> %\VignetteEngine{knitr::rmarkdown} >> %\VignetteIndexEntry{my tutorial} >> %\usepackage[utf8]{inputenc} >> --- >> >> and then run in R: >> rmarkdown::render("vignette.Rmd", "html_document") >> >> However after R CMD check and build, the html vignette is not included in >> the package tarball. >> >> How I can ensure that the html vignette will be included in the final >> tarball ? Querying the bioc list messages did not lead to solution so far. >> >> >> best regards >> Leo Lahti >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
