n Morgan
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problems with MACPET package
I have been trying to push the updates on RELEASE_3_9, but they don’t seem to
get updated. They are only updated on GitHub.
Best,
Ioannis
17. jul. 2019 kl. 12:50 skrev Martin Morgan
mailto:mtmor
I have been trying to push the updates on RELEASE_3_9, but they don’t seem to
get updated. They are only updated on GitHub.
Best,
Ioannis
17. jul. 2019 kl. 12:50 skrev Martin Morgan
mailto:mtmorgan.b...@gmail.com>>:
Bioc devel prepares for the next release of bioc, using the version of R that
Bioc devel prepares for the next release of bioc, using the version of R that
will be closest to that in use at the time of the release.
The version of R that will be in use at the time of the next bioc release will
be R-3.6.*.
You should be using R-3.6 for bioc-devel.
This is summarized at ht
My seesionInfo:
sessionInfo()
R Under development (unstable) (2019-07-11 r76823)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5
And
BiocManager::install("stringdist")
Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable)
(2019-07-11 r7682
My seesionInfo:
> sessionInfo()
R Under development (unstable) (2019-07-11 r76823)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5
And
> BiocManager::install("stringdist")
Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable)
(2019-07-11 r
It should be possible to get stringdist as a binary package for mac.
provide your sessionInfo().
> BiocManager::install("stringdist")
*Bioconductor version 3.10 (BiocManager 1.30.4), R 3.6.0 Patched
(2019-05-06*
* r76460)*
*Installing package(s) 'stringdist'*
*trying URL
'https://cran.rstudio
I have changed the S4methods now and the Rcheck is working fine locally on my
machine.
I cannot run BiocCheck because I cannot install it on my Mac anymore. It
depends on a package named stringdist, which cannot be installed in my Mac. I
get an error:
clang: error: unsupported option '-fopenmp
Under bioc-devel, I ran
MACPET/vignettes$ R CMD Stangle MACPET.Rmd
and then in R
source("MACPET.R", echo = TRUE)
where the problem manifests as
> summary(MACPET_pintraData,heatmap=TRUE)
Error in .Vector_summary(object, ...) : unused argument (heatmap = TRUE)
You have the S4 class
> g
