Bioc devel prepares for the next release of bioc, using the version of R that will be closest to that in use at the time of the release.
The version of R that will be in use at the time of the next bioc release will be R-3.6.*. You should be using R-3.6 for bioc-devel. This is summarized at http://bioconductor.org/developers/how-to/useDevel/ ; if there are improvments to the wording there please feel free to provide a pull request on https://github.com/Bioconductor/bioconductor.org/blob/master/content/developers/how-to/useDevel.md 'RELEASE_3_10' as a branch does not exist because there has not yet been a release 3.10; the 'master' branch is the location where devel builds from. Martin On 7/17/19, 5:46 AM, "Bioc-devel on behalf of Ioannis Vardaxis" <bioc-devel-boun...@r-project.org on behalf of ioannis.varda...@ntnu.no> wrote: My seesionInfo: sessionInfo() R Under development (unstable) (2019-07-11 r76823) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Mojave 10.14.5 And BiocManager::install("stringdist") Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable) (2019-07-11 r76823) Installing package(s) 'stringdist' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘stringdist’ Do you want to attempt to install these from sources? (Yes/no/cancel) Yes Also, I cannot push to RELEASE_3_10 because I get error: $git checkout RELEASE_3_10 error: pathspec 'RELEASE_3_10' did not match any file(s) known to git Shouldn’t I use the R devel version? Best, Ioannis 15. jul. 2019 kl. 09:53 skrev Ioannis Vardaxis <ioannis.varda...@ntnu.no<mailto:ioannis.varda...@ntnu.no>>: My seesionInfo: sessionInfo() R Under development (unstable) (2019-07-11 r76823) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Mojave 10.14.5 And BiocManager::install("stringdist") Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable) (2019-07-11 r76823) Installing package(s) 'stringdist' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Warning: unable to access index for repository https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7: cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7/PACKAGES' Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘stringdist’ Do you want to attempt to install these from sources? (Yes/no/cancel) Yes Also, I cannot such to RELEASE_3_10 because I get error: $git checkout RELEASE_3_10 error: pathspec 'RELEASE_3_10' did not match any file(s) known to git [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
