Re: [Bioc-devel] Package Without a Vignette

2016-04-02 Thread Dan Tenenbaum
- Original Message - > From: "Zhilong Jia" > To: "Dan Tenenbaum" > Cc: "Stefan Haunsberger" , "bioc-devel" > > Sent: Saturday, April 2, 2016 11:51:24 PM > Subject: Re: [Bioc-devel] Package Without a Vignette > Hi Dan, &g

Re: [Bioc-devel] Package Without a Vignette

2016-04-02 Thread Zhilong Jia
at line, > the vignettes will not be built. > > Dan > > > > > - Original Message - > > From: "Zhilong Jia" > > To: "Dan Tenenbaum" > > Cc: "Stefan Haunsberger" , "bioc-devel" < > bioc-devel@r-proj

Re: [Bioc-devel] Package Without a Vignette

2016-04-02 Thread Dan Tenenbaum
Jia" > To: "Dan Tenenbaum" > Cc: "Stefan Haunsberger" , "bioc-devel" > > Sent: Saturday, April 2, 2016 7:23:14 PM > Subject: Re: [Bioc-devel] Package Without a Vignette > Hi Dan, > > Thank you. I updated it. > > At the beginning,

Re: [Bioc-devel] Package Without a Vignette

2016-04-02 Thread Zhilong Jia
> > Dan > > > - Original Message - > > From: "Zhilong Jia" > > To: "Stefan Haunsberger" > > Cc: "bioc-devel" > > Sent: Saturday, April 2, 2016 5:48:59 PM > > Subject: Re: [Bioc-devel] Package Without a Vignette > >

Re: [Bioc-devel] Package Without a Vignette

2016-04-02 Thread Dan Tenenbaum
In DESCRIPTION change VignetteBuilder: rmarkdown to VignetteBuilder: knitr Dan - Original Message - > From: "Zhilong Jia" > To: "Stefan Haunsberger" > Cc: "bioc-devel" > Sent: Saturday, April 2, 2016 5:48:59 PM > Subject: Re: [Bioc-de

Re: [Bioc-devel] Package Without a Vignette

2016-04-02 Thread Zhilong Jia
Hi, I just found no vignette for my updated package cogena (1.5.2), though there are vignettes in the code. And the check CMD is /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings cogena_1.5.2.tar.gz in http://bioco

Re: [Bioc-devel] Package Without a Vignette

2016-03-22 Thread Stefan Haunsberger
Hi, Yes, my bad. I'm already on it. Thanks, Stefan On Tue, Mar 22, 2016 at 10:14 AM Martin Morgan < martin.mor...@roswellpark.org> wrote: > > > On 03/22/2016 03:00 AM, Dario Strbenac wrote: > > Hello, > > > > The newly added Bioconductor package miRNAmeConverter has no vignette, > although a vi

Re: [Bioc-devel] Package Without a Vignette

2016-03-22 Thread Martin Morgan
On 03/22/2016 03:00 AM, Dario Strbenac wrote: Hello, The newly added Bioconductor package miRNAmeConverter has no vignette, although a vignette is a requirement for Bioconductor packages which are not simply annotation databases. Rather, the package has a vignette, but it is not built. Th