In DESCRIPTION change VignetteBuilder: rmarkdown
to VignetteBuilder: knitr Dan ----- Original Message ----- > From: "Zhilong Jia" <zhilong...@gmail.com> > To: "Stefan Haunsberger" <stefan.haunsber...@gmail.com> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Saturday, April 2, 2016 5:48:59 PM > Subject: Re: [Bioc-devel] Package Without a Vignette > Hi, > > I just found no vignette for my updated package cogena > <http://bioconductor.org/packages/3.3/bioc/html/cogena.html> (1.5.2), > though there are vignettes in the code. And the check CMD is > /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings > cogena_1.5.2.tar.gz in > http://bioconductor.org/checkResults/3.3/bioc-LATEST/cogena/zin2-checksrc.html > > And the similar section is here: > > vignette: > > %\VignetteIndexEntry{Vignette Title} > %\VignetteEngine{knitr::rmarkdown} > %\usepackage[utf8]{inputenc} > > No \\ here. > > > Thank you. > > Regards, > Zhilong > > > On 22 March 2016 at 18:24, Stefan Haunsberger <stefan.haunsber...@gmail.com> > wrote: > >> Hi, >> >> Yes, my bad. I'm already on it. >> >> Thanks, >> Stefan >> >> On Tue, Mar 22, 2016 at 10:14 AM Martin Morgan < >> martin.mor...@roswellpark.org> wrote: >> >> > >> > >> > On 03/22/2016 03:00 AM, Dario Strbenac wrote: >> > > Hello, >> > > >> > > The newly added Bioconductor package miRNAmeConverter has no vignette, >> > although a vignette is a requirement for Bioconductor packages which are >> > not simply annotation databases. >> > >> > Rather, the package has a vignette, but it is not built. >> > >> > This is because of the '\\' in the vignette header. Also, the 'html' and >> > 'pdf' versions of the vignette should not be in SVN. >> > >> > I've cc'd the maintainer. >> > >> > Martin >> > >> > >> > Index: miRNAmeConverter-vignette.Rmd >> > =================================================================== >> > --- miRNAmeConverter-vignette.Rmd (revision 115094) >> > +++ miRNAmeConverter-vignette.Rmd (working copy) >> > @@ -9,9 +9,9 @@ >> > csl: apa.csl >> > bibliography: references.bib >> > vignette: > >> > - %\\VignetteIndexEntry{miRNAmeConverter-vignette} >> > - %\\VignetteEncoding{UTF-8} >> > - %\\VignetteEngine{knitr::rmarkdown} >> > + %\VignetteIndexEntry{miRNAmeConverter-vignette} >> > + %\VignetteEncoding{UTF-8} >> > + %\VignetteEngine{knitr::rmarkdown} >> > --- >> > >> > <!-- output: >> > >> > >> > > >> > > -------------------------------------- >> > > Dario Strbenac >> > > PhD Student >> > > University of Sydney >> > > Camperdown NSW 2050 >> > > Australia >> > > _______________________________________________ >> > > Bioc-devel@r-project.org mailing list >> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > >> > >> > >> > This email message may contain legally privileged and/or confidential >> > information. If you are not the intended recipient(s), or the employee >> or >> > agent responsible for the delivery of this message to the intended >> > recipient(s), you are hereby notified that any disclosure, copying, >> > distribution, or use of this email message is prohibited. If you have >> > received this message in error, please notify the sender immediately by >> > e-mail and delete this email message from your computer. Thank you. >> > >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > > > -- > Zhilong JIA > zhilong...@gmail.com > https://github.com/zhilongjia > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel