Re: [Bioc-devel] Package Classifications via BiocViews

2022-10-05 Thread Kern, Lori
Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Burak Ogan Mancarci Sent: Thursday, September 29, 2022 2:55 AM To: Herv� Pag�s Cc: Kern, Lori ; bioc-devel@r-project.org Subject: Re: [Bioc-devel]

Re: [Bioc-devel] Package Classifications via BiocViews

2022-09-28 Thread Burak Ogan Mancarci
I have switched out the terms. Thanks a lot and sorry about the mess. Cheers, Ogan On Wed, Sep 28, 2022 at 4:36 PM Hervé Pagès wrote: > On 28/09/2022 16:03, Hervé Pagès wrote: > > > Hi Burak, > > > > Based on your description of what the package does, this is really a > > software package in na

Re: [Bioc-devel] Package Classifications via BiocViews

2022-09-28 Thread Hervé Pagès
On 28/09/2022 16:03, Hervé Pagès wrote: Hi Burak, Based on your description of what the package does, this is really a software package in nature, so is in the wrong repository. We need to fix this. In 4 steps: 1. Please remove the ExperimentData term from the biocViews field as well as a

Re: [Bioc-devel] Package Classifications via BiocViews

2022-09-28 Thread Hervé Pagès
Hi Burak, Based on your description of what the package does, this is really a software package in nature, so is in the wrong repository. We need to fix this. In 4 steps: 1. Please remove the ExperimentData term from the biocViews field as well as any term that belongs to the ExperimentData

Re: [Bioc-devel] Package Classifications via BiocViews

2022-09-28 Thread Burak Ogan Mancarci
Apologies for the inconvenience. The change isn't essential on our end and can be avoided or delayed if you think the ExperimentData label can be applied to a package responsible for accessing data from a database rather than storing static data. We were only worried about misleading use of biocvi

Re: [Bioc-devel] Package Classifications via BiocViews

2022-09-28 Thread Kern, Lori
Changing the biocviews is not sufficient. There needs to be work on our end to change the manifest the package belongs to and to clear the build products from the data repositories so it is only found in one location. Are you sure you want to proceed with switching? It is not trivial on our en