Apologies for the inconvenience. The change isn't essential on our end and can be avoided or delayed if you think the ExperimentData label can be applied to a package responsible for accessing data from a database rather than storing static data. We were only worried about misleading use of biocviews terms.
Cheers, Ogan On Wed., Sep. 28, 2022, 14:26 Kern, Lori, <lori.sheph...@roswellpark.org> wrote: > Changing the biocviews is not sufficient. There needs to be work on our > end to change the manifest the package belongs to and to clear the build > products from the data repositories so it is only found in one location. > > Are you sure you want to proceed with switching? It is not trivial on our > end. > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Burak > Ogan Mancarci <ogan.mancar...@gmail.com> > *Sent:* Wednesday, September 28, 2022 9:17 AM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* [Bioc-devel] Package Classifications via BiocViews > > Hi, > > I am a developer working on the bioconductor package gemma.R > < > https://secure-web.cisco.com/1wIQY41Mq8CRYqLq1luoPm43XSj6Icl27w6udr35y-BxPHgEP6B5pApAAeBdBeWsydixV0CSwBVIVl2C7mJykPI3ESX7qtp-xJOSvJAu4T1yzHr3CWRc7s6LY_WtIcrnzfyw3MI7z0oqv1hzA1x5oRN1kFZ-KF6tttbi86SwIwZhYADSMaK1xXJxmlZ0Oe8CtJ6jKBrSjnn6fnDONMFHadvspGk8Gxc7N15gdoVzcbADiR0q1V7O973S1e0Fu6CFPAayqcCBKIOs4_xfp6nm1HNupK82P0Bawyi3Bc4Fu2vcDQKLcgU-gyiBMkego3WW4/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.16%2Fdata%2Fexperiment%2Fhtml%2Fgemma.R.html > >. > On publication we have used the ExperimentData biocview to classify the > package but we believe this was not the correct decision since the > package's function is to access a database much like geoquery. I was > wondering if it was safe to change the classification on our end by > changing biocviews directly or if it would cause issues with the > bioconductor infrastructure? > > Cheers, > Ogan > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1T5fXNWrq0wVkhsBGGZem_PrfqZL4JVbxk93lJB7cvCmSzN0HQXSMpdqsrdB-M-09zasav4vj733ww5BnQASs1jdsouSO0jb4woXH7k0uksmqx3BhiCXJy0Mwx7Lm3Y-CZdMcl-wRht_iwp5HSLm92GQ0X9FlCbqajgbnLRL79fA6nWZAIFiGim4shu4ZdLRn1HpNCM-UApMLDl1YReeF_UVn6EWI1QphpP--G8sq4j0nYkOefHddWPyHlTNwCg-f2aZd94WzVyCs9rzrmaF54N8FmJ-RTYeRHbVsmsWez047xQCe1sEkuv5HUjkC8Wqy/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
