Re: [Bioc-devel] daily build failures for the trena package, related to BSgenome.Hsapiens.UCSC.hg38 2bit file

I tried to reproduce the commands reported by the build system. So on a fresh git clone $ cd /tmp $ git clone g...@git.bioconductor.org:packages/trena $ R -vanilla CMD build --keep-empty-dirs --no-resave-data trena (the buld system doesn't use vanilla, but I have an ~/.Rprofile and maybe o

Re: [Bioc-devel] Daily build

Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Obenchain, Valerie Sent: Friday, March 9, 2018 11:35:38 AM To: Nicolas Descostes; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Daily build That sounds like a bug. Thanks for the report, we'll

Re: [Bioc-devel] Daily build

That sounds like a bug. Thanks for the report, we'll look into it. Valerie On 03/09/2018 07:48 AM, Nicolas Descostes wrote: I mean that on the landing page: https://bioconductor.org/packages/3.7/bioc/html/ChIPSeqSpike.html If you click on NEWS (https://bioconductor.org/packages/3.7/bioc/news/

Re: [Bioc-devel] Daily build

What do you mean by 'the NEWS file has not been properly updated'? Did you commit a change before the builds started, bumped the package version and the package you downloaded with biocLite() was somehow out of date? Or was a download from the landing page out of date ... ? Valerie On 03/09/

Re: [Bioc-devel] Daily build

Hi Nicolas, This is the last commit I see in the master branch for ChIPSeqSpike: commit abce855631cb5689bd345df41e71cfee356a1c6f (HEAD -> master, origin/master, origin/HEAD) Author: kitano902 Date: Fri Jan 26 14:29:26 2018 -0500 remove '{' in count.Rd

Re: [Bioc-devel] daily build system behind

Dear Levi, please note that experiment data packages are now build just twice a week, on Wednesdays and Saturdays. So no need to worry. Cheers, Andrzej On Tue, Sep 9, 2014 at 5:01 PM, Levi Waldron wrote: > I just noticed that the daily build systems are several days behind, eg for > experimenta

Re: [Bioc-devel] daily build problems, how to debug?

- Original Message - > From: "Dan Tenenbaum" > To: "J. Hettling" > Cc: bioc-devel@r-project.org > Sent: Thursday, February 13, 2014 8:08:16 AM > Subject: Re: [Bioc-devel] daily build problems, how to debug? > > > > - Original Mess

Re: [Bioc-devel] daily build problems, how to debug?

- Original Message - > From: "J. Hettling" > To: bioc-devel@r-project.org > Sent: Thursday, February 13, 2014 4:29:21 AM > Subject: [Bioc-devel] daily build problems, how to debug? > > Dear Bioconductor developers, > > since updating our package 'BiGGR' on the development branch, the >

Re: [Bioc-devel] daily build problems, how to debug?

Hannes, I think (but don't know) that there is something happening with the build servers these days. The Windows machine has disappeared. This sometimes happens and I would just wait a day or two. Perhaps the build team can comment? Best, Kasper On Thu, Feb 13, 2014 at 8:58 AM, Cristobal Fr

Re: [Bioc-devel] daily build problems, how to debug?

Hi Hannes, Are you using the "*R devel engine*" installed in zin2 (R Under development (unstable) (2014-01-15 r64790) -- "Unsuffered Consequences")? and then installed "*devel BiocLite 2.14*"? Regards, Cristobal 2014-02-13 9:29 GMT-03:00 Hettling, J. : > Dear Bioconductor developers, > > sinc