Re: [Bioc-devel] test coverage status unkown

2016-03-07 Thread Ou, Jianhong
mailto:james.f.hes...@gmail.com>> Date: Monday, March 7, 2016 1:53 PM To: Jianhong Ou mailto:jianhong...@umassmed.edu>> Cc: bioc-devel mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] test coverage status unkown `covr::codecov()` _has_ to be run on a git repository unless bo

Re: [Bioc-devel] test coverage status unkown

2016-03-07 Thread Jim Hester
`covr::codecov()` _has_ to be run on a git repository unless both the commit and branch are given as arguments which is the cause of your error `Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128`. The coverage of your package in both devel ( http://bioconductor.org/pa

[Bioc-devel] test coverage status unkown

2016-03-07 Thread Ou, Jianhong
Hi, The test coverage status for ChIPpeakAnno devel version is shown as unknown. I tried covr::package_coverage(clean=FALSE), it reports: ChIPpeakAnno Test Coverage: 40.49% However, when I try codecov() I got error: Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128