Thank you a lot for your quick response, Jim. I deeply appreciate for your help.
Yours Sincerely, Jianhong Ou TEL: 508-856-5379 LRB 608 Bioinformatician of Bioinformatics core at Department of Molecular, Cell and Cancer Biology 364 Plantation Street Worcester, MA 01605 From: Jim Hester <james.f.hes...@gmail.com<mailto:james.f.hes...@gmail.com>> Date: Monday, March 7, 2016 1:53 PM To: Jianhong Ou <jianhong...@umassmed.edu<mailto:jianhong...@umassmed.edu>> Cc: bioc-devel <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] test coverage status unkown `covr::codecov()` _has_ to be run on a git repository unless both the commit and branch are given as arguments which is the cause of your error `Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128`. The coverage of your package in both devel (http://bioconductor.org/packages/devel/bioc/html/ChIPpeakAnno.html) and release (http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html) looks to be properly populated now, so this must be fixed. On Mon, Mar 7, 2016 at 9:34 AM, Ou, Jianhong <jianhong...@umassmed.edu<mailto:jianhong...@umassmed.edu>> wrote: Hi, The test coverage status for ChIPpeakAnno devel version is shown as unknown. I tried covr::package_coverage(clean=FALSE), it reports: ChIPpeakAnno Test Coverage: 40.49% However, when I try codecov() I got error: Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128 Could any one help me to fix this problem? Thanks a lot. Yours Sincerely, Jianhong Ou TEL: 508-856-5379<tel:508-856-5379> LRB 608 Bioinformatician of Bioinformatics core at Department of Molecular, Cell and Cancer Biology 364 Plantation Street Worcester, MA 01605 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
