Re: [Bioc-devel] report a minor bug in GenomicRanges

2014-03-21 Thread Hervé Pagès
On 03/21/2014 11:33 AM, Ou, Jianhong wrote: Yes, I am calling reduce on a GRanges object. I just hate any warning or error message. That's all. I'm sympathetic: I hate them too :-) So in GenomicRanges 1.15.40 (should become available tomorrow), you should be able to use the new 'with.revmap' a

Re: [Bioc-devel] report a minor bug in GenomicRanges

2014-03-21 Thread Ou, Jianhong
Yes, I am calling reduce on a GRanges object. I just hate any warning or error message. That's all. Yours Sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605 On 3/21/14 1:26 PM, "Hervé Pagès" wrote: >Hi Jianhong, > >On 03/21/201

Re: [Bioc-devel] report a minor bug in GenomicRanges

2014-03-21 Thread Hervé Pagès
Hi Jianhong, On 03/21/2014 07:01 AM, Ou, Jianhong wrote: Hi, When I run sample code for reduce, I got Warning message: The 'with.mapping' argument is deprecated. Please use the 'with.revmap' argument instead. Not really a bug, just a warning that the 'with.mapping' arg is being replaced

[Bioc-devel] report a minor bug in GenomicRanges

2014-03-21 Thread Ou, Jianhong
Hi, When I run sample code for reduce, I got Warning message: The 'with.mapping' argument is deprecated. Please use the 'with.revmap' argument instead. Yours Sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605 [[alternat